Non-Coding RNA Search

Lng1-LNG010014C02

Sequence:


               
               AGCTTTTCTCACCATTGTTGAAAATACCCTGCGCAGGTTTCTTAAATACTTCTGGTAATC
CAGTCATTTCTGTACTCTGGGGACACTAGTAGCTGGACTTGTTCTGTCCAGAGATGACAT
TCAGTTGGATGGTTGGAGCTGCCAGAACTCAAAAGATGGACTTCACAACAAACCATTAAA
TGGGTTACCCCTTTGAACTGTGCATATGGTTTCTTGTTTTCCATCATCCTGACTCCTCTT
TATTTTTGTGGTACTAAGGATAACATTGAGCAGCCTTAGGCTTTGTGTTCAGGGCCAGAA
TCATTCCCTGTGCATCAGCACTGTCTATAACATTGGGGCCGCCACTGGCAGTTGCACAGG
CTGTGCACTGCACAACTCCCAGGGGTACAGCTCATGCCCGTAGTCTATGCGAAGAGAGCC
TCAGTGTTGTGCAGTGATCCACAATCCACAGAGAAGCTCTTCATAGCACCCCTAAGAGAA
ACCAAAGACCCAATCACCCTGCAGGAGGTGTTAATGAGTACAGCTGGCATTAAATCCCCG
AGTCACAGACCCACTGCCTCCAAAGACCTGGCAAATCACGTAAATGAGTGAAGCAGTTTG
TGTATAAGAAGTAGGAAGTAggagttcccgtcgtggcgcagtggttaacgaatccgacta
ggaaccatgaggttgcgggttcgatgcctgcccttgctcagtgggttaacgatccagcgt
tgccgtgagctgtggtgtaggttgcagacgcagttcggatcccgcgttgctgtggctctg
gcgtaggccagtggctacagctccgattcaacccctagcctgggaacctccatatgccga
gggagcggccc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTTTTCTCACCATTGTTGAAAATACCCTGCGCAGGTTTCTTAAATACTTCTGGTAATC
CAGTCATTTCTGTACTCTGGGGACACTAGTAGCTGGACTTGTTCTGTCCAGAGATGACAT
TCAGTTGGATGGTTGGAGCTGCCAGAACTCAAAAGATGGACTTCACAACAAACCATTAAA
TGGGTTACCCCTTTGAACTGTGCATATGGTTTCTTGTTTTCCATCATCCTGACTCCTCTT
TATTTTTGTGGTACTAAGGATAACATTGAGCAGCCTTAGGCTTTGTGTTCAGGGCCAGAA
TCATTCCCTGTGCATCAGCACTGTCTATAACATTGGGGCCGCCACTGGCAGTTGCACAGG
CTGTGCACTGCACAACTCCCAGGGGTACAGCTCATGCCCGTAGTCTATGCGAAGAGAGCC
TCAGTGTTGTGCAGTGATCCACAATCCACAGAGAAGCTCTTCATAGCACCCCTAAGAGAA
ACCAAAGACCCAATCACCCTGCAGGAGGTGTTAATGAGTACAGCTGGCATTAAATCCCCG
AGTCACAGACCCACTGCCTCCAAAGACCTGGCAAATCACGTAAATGAGTGAAGCAGTTTG
TGTATAAGAAGTAGGAAGTAggagttcccgtcgtggcgcagtggttaacgaatccgacta
ggaaccatgaggttgcgggttcgatgcctgcccttgctcagtgggttaacgatccagcgt
tgccgtgagctgtggtgtaggttgcagacgcagttcggatcccgcgttgctgtggctctg
gcgtaggccagtggctacagctccgattcaacccctagcctgggaacctccatatgccga
gggagcggccc

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               119-235, - strand, RNAz p=0.576343
               

               
               276-471, - strand, RNAz p=0.748329

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-235, - strand, RNAz p=0.576343
               

               
               276-471, - strand, RNAz p=0.748329

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-615, gnl|bosTau2|chr9 (33074419-33074996)
               

               
               2-615, gnl|Hg17|chr6 (90774560-90773966)
               

               
               2-615, gnl|Mm7|chr4 (32780723-32781301)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-615, gnl|bosTau2|chr9 (33074419-33074996)
               

               
               2-615, gnl|Hg17|chr6 (90774560-90773966)
               

               
               2-615, gnl|Mm7|chr4 (32780723-32781301)

	119-235, - strand, RNAz p=0.576343
	276-471, - strand, RNAz p=0.748329

	2-615, gnl\|bosTau2\|chr9 (33074419-33074996)
	2-615, gnl\|Hg17\|chr6 (90774560-90773966)
	2-615, gnl\|Mm7\|chr4 (32780723-32781301)