Non-Coding RNA Search

Lng1-LNG010019D07

Sequence:


               
               TTTATTAAGTATTAAAAACATATTCTTTAAAATCAGCTCTGTTCTTTAATACTTCGAGTG
CATGGTGTCTGTTCAGAGTGAAATACAGTTGCCAGAATCTTCAAACAGCTTTACAATCTG
CCTTGCTTCTATTTACTAATAGTTTACATTCACTGTGTCTCCTCTTTTATCTCCACTACA
TTGGTGCCATTAATCATTTGCCTAAGAGACTTGGTCTATAAGGTAATGAAGAGATATAAA
TCCTGTGATGCTGAATTTCCTAAGTTTCTTCATAAATCTTTAGGCTCAGGCTACTTCATT
GGCCTGCCTGTCTTACTATTTACGGAACAGTGTCACTAATCTAACTCTAGCCTTCAGAAA
AAAGAAAGAAAGATGCTCCTAAGTGTAATCCTGTAAAACCAGTGATCCTAAGTTGGAACC
ATAAAAACGGTGAACAGTCATGGGCTCCCTAGTCAACCCCAGAACTAGAACACTGCTAAG
TACATGCATCTCCTAACTCCCCATAGCCAAGTCAGTTTCAGTATGCAGTGTTAGCGCTTG
GGAAGCCAAAGGGATTTTGTCGGTTCTGTTAATCACTGGTGTCCCGAAGTGCTGACTTAT
TTTGCCCATTGCTGACCCACAGCATTGCATAGGAGGACTCTTCCTCATGATATTTTATAA
GCCTTCTGCAAGAGAAGGCTTCTTTACCCCACTAGCTCAGAATGCCAAAGATGGATAACA
GGCTTTTATCTAAGTGGCAATTCCAGAGCTGTTGTAAATTTCAACAGAGGGACTGCTGGT
CTTCTTCCTCCATACTCTTCCTGGGTGTGTTTATCAACAAGGGACAGAAAAGTGAGTTAT
TCCATTGAGTCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTAAGTATTAAAAACATATTCTTTAAAATCAGCTCTGTTCTTTAATACTTCGAGTG
CATGGTGTCTGTTCAGAGTGAAATACAGTTGCCAGAATCTTCAAACAGCTTTACAATCTG
CCTTGCTTCTATTTACTAATAGTTTACATTCACTGTGTCTCCTCTTTTATCTCCACTACA
TTGGTGCCATTAATCATTTGCCTAAGAGACTTGGTCTATAAGGTAATGAAGAGATATAAA
TCCTGTGATGCTGAATTTCCTAAGTTTCTTCATAAATCTTTAGGCTCAGGCTACTTCATT
GGCCTGCCTGTCTTACTATTTACGGAACAGTGTCACTAATCTAACTCTAGCCTTCAGAAA
AAAGAAAGAAAGATGCTCCTAAGTGTAATCCTGTAAAACCAGTGATCCTAAGTTGGAACC
ATAAAAACGGTGAACAGTCATGGGCTCCCTAGTCAACCCCAGAACTAGAACACTGCTAAG
TACATGCATCTCCTAACTCCCCATAGCCAAGTCAGTTTCAGTATGCAGTGTTAGCGCTTG
GGAAGCCAAAGGGATTTTGTCGGTTCTGTTAATCACTGGTGTCCCGAAGTGCTGACTTAT
TTTGCCCATTGCTGACCCACAGCATTGCATAGGAGGACTCTTCCTCATGATATTTTATAA
GCCTTCTGCAAGAGAAGGCTTCTTTACCCCACTAGCTCAGAATGCCAAAGATGGATAACA
GGCTTTTATCTAAGTGGCAATTCCAGAGCTGTTGTAAATTTCAACAGAGGGACTGCTGGT
CTTCTTCCTCCATACTCTTCCTGGGTGTGTTTATCAACAAGGGACAGAAAAGTGAGTTAT
TCCATTGAGTCACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               669-786, + strand, RNAz p=0.828453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               669-786, + strand, RNAz p=0.828453

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-366, gnl|bosTau2|chr3 (1122333-1121978)
               

               
               3-366, gnl|Hg17|chr8 (13014820-13014290)
               


               
               388-850, gnl|bosTau2|chr3 (1121870-1121421)
               

               
               388-850, gnl|Hg17|chr8 (13014214-13013427)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-366, gnl|bosTau2|chr3 (1122333-1121978)
               

               
               3-366, gnl|Hg17|chr8 (13014820-13014290)
               


               
               388-850, gnl|bosTau2|chr3 (1121870-1121421)
               

               
               388-850, gnl|Hg17|chr8 (13014214-13013427)

	3-366, gnl\|bosTau2\|chr3 (1122333-1121978)
	3-366, gnl\|Hg17\|chr8 (13014820-13014290)

	388-850, gnl\|bosTau2\|chr3 (1121870-1121421)
	388-850, gnl\|Hg17\|chr8 (13014214-13013427)