Non-Coding RNA Search

Lng1-LNG010019H02

Sequence:


               
               ACAGCTGCCCTAGAGGCAGATTGCTAACATACCACTAGAACAATCCCTCCCCTCTGTTCT
GATGCTGGCGAGCACAATCTTCCCCGCTTCTAGTTCCTTCTGTTTCCCACCTCACCTCTG
ATCTCTGCTTTTGGTTTATTTAGTGGGATGTCACATTAAAAATGAGAGTAGGGACAttcc
ctcatggctcggtgggttaagggtccagtgttgtcactgctgtggagagggtttgattcc
tggcctgggaacttcATATGCCACAGGCGTGCCCACCCCAAGAAGACCCCCAAAATGAAG
GCAAGACCCAAAGGTCTAGATGCTTCCACCTCATCCTTTCTCATTACCCCCTCCCCCCCA
CCCCCGCCCCAGAGTTTACTTTCATCACCTTTTTTTGAGTTAAAATGAGTTTTAACCACA
GGAGGTATAGAAAGTTCATACTTATTTCATTATGTCAAGGAGAACGAATATGGACTTGAA
GAACTACAGATGCATTTCCACCACTTACTAGTTATATGGTGACCTTGGGCAGGATACGGA
ATACTCTTTGCGGGGGTGGGGGGGGCGGGGAGCCAGGCCTTcggcatgcggaagttcccg
ggccagggatcaaccccaggcacagcactgacaatgccagatccttaacccactaggcca
ccagggaaTATTTCTGATGTAGTTTACTCATCTATAAAAGGGTCTAGTATACCTCAGAGA
TTGTTGGGAAGACTATGTGCAATAATTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGCTGCCCTAGAGGCAGATTGCTAACATACCACTAGAACAATCCCTCCCCTCTGTTCT
GATGCTGGCGAGCACAATCTTCCCCGCTTCTAGTTCCTTCTGTTTCCCACCTCACCTCTG
ATCTCTGCTTTTGGTTTATTTAGTGGGATGTCACATTAAAAATGAGAGTAGGGACAttcc
ctcatggctcggtgggttaagggtccagtgttgtcactgctgtggagagggtttgattcc
tggcctgggaacttcATATGCCACAGGCGTGCCCACCCCAAGAAGACCCCCAAAATGAAG
GCAAGACCCAAAGGTCTAGATGCTTCCACCTCATCCTTTCTCATTACCCCCTCCCCCCCA
CCCCCGCCCCAGAGTTTACTTTCATCACCTTTTTTTGAGTTAAAATGAGTTTTAACCACA
GGAGGTATAGAAAGTTCATACTTATTTCATTATGTCAAGGAGAACGAATATGGACTTGAA
GAACTACAGATGCATTTCCACCACTTACTAGTTATATGGTGACCTTGGGCAGGATACGGA
ATACTCTTTGCGGGGGTGGGGGGGGCGGGGAGCCAGGCCTTcggcatgcggaagttcccg
ggccagggatcaaccccaggcacagcactgacaatgccagatccttaacccactaggcca
ccagggaaTATTTCTGATGTAGTTTACTCATCTATAAAAGGGTCTAGTATACCTCAGAGA
TTGTTGGGAAGACTATGTGCAATAATTTAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.989355
               

               
               6-119, - strand, RNAz p=0.596695

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.989355
               

               
               6-119, - strand, RNAz p=0.596695

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-178, gnl|bosTau2|chr15 (51056808-51056635)
               

               
               1-178, gnl|canFam2|chr18 (41512375-41512015)
               

               
               1-178, gnl|echTel1|scaffold_292965 (62364-61991)
               

               
               1-178, gnl|hg17|chr11 (57303554-57303931)
               

               
               1-178, gnl|Hg17|chr11 (57303588-57303755)
               

               
               1-178, gnl|loxAfr1|scaffold_7507 (45708-45332)
               

               
               1-178, gnl|mm7|chr2 (84478827-84478485)
               

               
               1-178, gnl|Mm7|chr2 (84478791-84478627)
               

               
               1-178, gnl|monDom2|scaffold_33 (20892566-20892968)
               

               
               1-178, gnl|panTro1|chr9 (58213033-58213410)
               

               
               1-178, gnl|rheMac2|chr14 (15628443-15628057)
               

               
               1-178, gnl|rn3|chr3 (67740876-67740506)
               


               
               292-459, gnl|bosTau2|chr15 (51056411-51056246)
               

               
               292-459, gnl|Mm7|chr2 (84478303-84477958)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-178, gnl|bosTau2|chr15 (51056808-51056635)
               

               
               1-178, gnl|canFam2|chr18 (41512375-41512015)
               

               
               1-178, gnl|echTel1|scaffold_292965 (62364-61991)
               

               
               1-178, gnl|hg17|chr11 (57303554-57303931)
               

               
               1-178, gnl|Hg17|chr11 (57303588-57303755)
               

               
               1-178, gnl|loxAfr1|scaffold_7507 (45708-45332)
               

               
               1-178, gnl|mm7|chr2 (84478827-84478485)
               

               
               1-178, gnl|Mm7|chr2 (84478791-84478627)
               

               
               1-178, gnl|monDom2|scaffold_33 (20892566-20892968)
               

               
               1-178, gnl|panTro1|chr9 (58213033-58213410)
               

               
               1-178, gnl|rheMac2|chr14 (15628443-15628057)
               

               
               1-178, gnl|rn3|chr3 (67740876-67740506)
               


               
               292-459, gnl|bosTau2|chr15 (51056411-51056246)
               

               
               292-459, gnl|Mm7|chr2 (84478303-84477958)

	1-119, - strand, RNAz p=0.989355
	6-119, - strand, RNAz p=0.596695

	1-178, gnl\|bosTau2\|chr15 (51056808-51056635)
	1-178, gnl\|canFam2\|chr18 (41512375-41512015)
	1-178, gnl\|echTel1\|scaffold_292965 (62364-61991)
	1-178, gnl\|hg17\|chr11 (57303554-57303931)
	1-178, gnl\|Hg17\|chr11 (57303588-57303755)
	1-178, gnl\|loxAfr1\|scaffold_7507 (45708-45332)
	1-178, gnl\|mm7\|chr2 (84478827-84478485)
	1-178, gnl\|Mm7\|chr2 (84478791-84478627)
	1-178, gnl\|monDom2\|scaffold_33 (20892566-20892968)
	1-178, gnl\|panTro1\|chr9 (58213033-58213410)
	1-178, gnl\|rheMac2\|chr14 (15628443-15628057)
	1-178, gnl\|rn3\|chr3 (67740876-67740506)

	292-459, gnl\|bosTau2\|chr15 (51056411-51056246)
	292-459, gnl\|Mm7\|chr2 (84478303-84477958)