Non-Coding RNA Search

Lng1-LNG010021H07

Sequence:


               
               TTTTATAGCTAGGATTGTATACACCCAGAATATCTATGAAAGGATTCACAGGCTCTGGTC
AGTAGTGAAAGCCTCTCCCGGGGAGCTGAGAACTACGGAGGAGAGATACTTTATCCCCTT
CCTATTCTTAGACGTGTTTCCCAACTGTATGTTTAATTTCCTCAACAAATAGTAATGACT
GGTGTAAAACATCCTCCACCAAAGGAAAAACAGACAGTGGGTTACCTTTGAAAGACAGCC
GAGACTCAGTATGAGTTCACATTTGCATGGGGTCGGGGGTTTGAACCAAATTGCATTTCA
GGTTTCCTGGCTGCAGGATTCCTCACTTGTGATCTATCGCTCACATCCCCTTAACCGTTG
AGACTTGTGGTCATCTGCTTCTGAGTGCCTCTTCTGTTGGGCCTCAGTGAGAGAAGGGGA
GATGTCCTAAATGGTTTCAGGAAGCCAGGTGGCAGCACTTGTTTGTGACAACGTGCGAGA
ATGGACTGTCAGGCTCTCAAAATGCACCCCTCAGAGCTGCTGCAAGGAAATATTGACAGT
GGTCAGCTTAGCATGTGAACATTCTTAACGTGTTCAGAGGCGTGTGACATTTCACCATCG
CAACTATCCAAACAAAGTATGAGAGCCATTCGGGTATTTTCATTGTGCAAGTGATGAATT
GTGAAATAAGATTCCATGAAACTAGCAGTTACAAACTTCAGCACCATCCCTCCAAACAAA
GACACTGCTCCCCTCTTACAGAGAGCCCCAGTGACTTGCTCCAGATCACACAGCCGTTCT
TTTCTGTCAGTCTGTCACTTCATGAAACATGTGCATGAGCTAAGCACTTCTTCAGGTGTT
TTGTTTTTGTAATTAGTACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATAGCTAGGATTGTATACACCCAGAATATCTATGAAAGGATTCACAGGCTCTGGTC
AGTAGTGAAAGCCTCTCCCGGGGAGCTGAGAACTACGGAGGAGAGATACTTTATCCCCTT
CCTATTCTTAGACGTGTTTCCCAACTGTATGTTTAATTTCCTCAACAAATAGTAATGACT
GGTGTAAAACATCCTCCACCAAAGGAAAAACAGACAGTGGGTTACCTTTGAAAGACAGCC
GAGACTCAGTATGAGTTCACATTTGCATGGGGTCGGGGGTTTGAACCAAATTGCATTTCA
GGTTTCCTGGCTGCAGGATTCCTCACTTGTGATCTATCGCTCACATCCCCTTAACCGTTG
AGACTTGTGGTCATCTGCTTCTGAGTGCCTCTTCTGTTGGGCCTCAGTGAGAGAAGGGGA
GATGTCCTAAATGGTTTCAGGAAGCCAGGTGGCAGCACTTGTTTGTGACAACGTGCGAGA
ATGGACTGTCAGGCTCTCAAAATGCACCCCTCAGAGCTGCTGCAAGGAAATATTGACAGT
GGTCAGCTTAGCATGTGAACATTCTTAACGTGTTCAGAGGCGTGTGACATTTCACCATCG
CAACTATCCAAACAAAGTATGAGAGCCATTCGGGTATTTTCATTGTGCAAGTGATGAATT
GTGAAATAAGATTCCATGAAACTAGCAGTTACAAACTTCAGCACCATCCCTCCAAACAAA
GACACTGCTCCCCTCTTACAGAGAGCCCCAGTGACTTGCTCCAGATCACACAGCCGTTCT
TTTCTGTCAGTCTGTCACTTCATGAAACATGTGCATGAGCTAAGCACTTCTTCAGGTGTT
TTGTTTTTGTAATTAGTACACA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-107, - strand, RNAz p=0.732735
               

               
               478-591, + strand, RNAz p=0.521144

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-107, - strand, RNAz p=0.732735
               

               
               478-591, + strand, RNAz p=0.521144

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-858, gnl|bosTau2|chrX (39896309-39897192)
               

               
               1-858, gnl|Hg17|chrX (15588815-15590321)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-858, gnl|bosTau2|chrX (39896309-39897192)
               

               
               1-858, gnl|Hg17|chrX (15588815-15590321)

	1-107, - strand, RNAz p=0.732735
	478-591, + strand, RNAz p=0.521144

	1-858, gnl\|bosTau2\|chrX (39896309-39897192)
	1-858, gnl\|Hg17\|chrX (15588815-15590321)