Lng1-LNG010022D06
|
ATTTTGCTGATTCCTCTTCCTGTTTCAGACCTCTCATTGTTGCCGTGCTTTTTTCTATCT
ATTCCTACCACGTAGGTGATGTCTTCCTGTCTCATGGCTTTCAGTGCCATCTCCATGCTG
ACGAATCTCACATCTGTAGTCCTGTGAATGACAGCCTTATTCTTCCAGTTGCTCAGGCCA
GGAATGCGGGACTCAACCTTGATTCCTCTCTTTCTCACACTGCCTGGATCCCATCCTTCA
GCAGTTTTGTGATCTCTCTCATTAAAGATAATCTGAAGTGCTGCCACTTCTTAGCATCCT
TAGGGCCACCACCCTGGTCCAAGCCACCATTATGGCTGGATGACCATCGTAGATGCTGAT
CCAAGCCATCATCTCTCATCTGGATTATAGCAGGTGGTAACCTCCTTGCTGCTTCTGCTT
TTGCTCCTTAGAGTCTCTTCTCTGCATAATAACCAGAGTGATCCTATTAATATTTTTATG
TGAGATTTTGCTTCCAATCTTGCCATGGTTTCTTATTCACTTAAAGGTAAAGCTGATATT
TTCACTGTGACCTACAAAGCCTTTTATGATATAGCTACTCATTATCTCTCTGATCTTATT
TCTGCTGTTTTCTCAATTATTTGTGTCTGTTCATCTTTCCTTGCTATTTCTTAGAAATGC
CGGGAACCCTTCTTTCTGCCTCAGGGCCTTTGTACGTAGTGTCTCCTCTGCCTGGAATGC
GCCTCCCCAGATGTCCCCATGGCCATGGCTCATTCTCTTTGGCTCTTTATGCAGCATCGT
CATCTCTGGGATGTCCACCCCCACTCGCCTCTGACATTCATGTCTGCTTGCTCTCGTCAG
CTTGCTATCAGCTCTTGTTGCTATGCTTAATACACTACCTGTTTTACTTACCTGTTTGTA
GTCATTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTTTGCTGATTCCTCTTCCTGTTTCAGACCTCTCATTGTTGCCGTGCTTTTTTCTATCT
ATTCCTACCACGTAGGTGATGTCTTCCTGTCTCATGGCTTTCAGTGCCATCTCCATGCTG
ACGAATCTCACATCTGTAGTCCTGTGAATGACAGCCTTATTCTTCCAGTTGCTCAGGCCA
GGAATGCGGGACTCAACCTTGATTCCTCTCTTTCTCACACTGCCTGGATCCCATCCTTCA
GCAGTTTTGTGATCTCTCTCATTAAAGATAATCTGAAGTGCTGCCACTTCTTAGCATCCT
TAGGGCCACCACCCTGGTCCAAGCCACCATTATGGCTGGATGACCATCGTAGATGCTGAT
CCAAGCCATCATCTCTCATCTGGATTATAGCAGGTGGTAACCTCCTTGCTGCTTCTGCTT
TTGCTCCTTAGAGTCTCTTCTCTGCATAATAACCAGAGTGATCCTATTAATATTTTTATG
TGAGATTTTGCTTCCAATCTTGCCATGGTTTCTTATTCACTTAAAGGTAAAGCTGATATT
TTCACTGTGACCTACAAAGCCTTTTATGATATAGCTACTCATTATCTCTCTGATCTTATT
TCTGCTGTTTTCTCAATTATTTGTGTCTGTTCATCTTTCCTTGCTATTTCTTAGAAATGC
CGGGAACCCTTCTTTCTGCCTCAGGGCCTTTGTACGTAGTGTCTCCTCTGCCTGGAATGC
GCCTCCCCAGATGTCCCCATGGCCATGGCTCATTCTCTTTGGCTCTTTATGCAGCATCGT
CATCTCTGGGATGTCCACCCCCACTCGCCTCTGACATTCATGTCTGCTTGCTCTCGTCAG
CTTGCTATCAGCTCTTGTTGCTATGCTTAATACACTACCTGTTTTACTTACCTGTTTGTA
GTCATTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-141, gnl|bosTau2|chr5 (9204596-9204732) |
|
1-141, gnl|Hg17|chr12 (81346385-81346514) |
| |
|
160-329, gnl|bosTau2|chr5 (9204803-9204966) |
|
160-329, gnl|canFam2|chr15 (27472196-27472393) |
|
160-329, gnl|hg17|chr12 (81346454-81346655) |
|
160-329, gnl|Hg17|chr12 (81346537-81346702) |
|
160-329, gnl|oryCun1|scaffold_177749 (6484-6291) |
|
160-329, gnl|panTro1|chr10 (83187737-83187937) |
|
160-329, gnl|rheMac2|chr11 (79418495-79418698) |
| |
|
366-906, gnl|bosTau2|chr5 (9204964-9205494) |
|
366-906, gnl|Hg17|chr12 (81346700-81347266) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-141, gnl|bosTau2|chr5 (9204596-9204732) |
|
1-141, gnl|Hg17|chr12 (81346385-81346514) |
| |
|
160-329, gnl|bosTau2|chr5 (9204803-9204966) |
|
160-329, gnl|canFam2|chr15 (27472196-27472393) |
|
160-329, gnl|hg17|chr12 (81346454-81346655) |
|
160-329, gnl|Hg17|chr12 (81346537-81346702) |
|
160-329, gnl|oryCun1|scaffold_177749 (6484-6291) |
|
160-329, gnl|panTro1|chr10 (83187737-83187937) |
|
160-329, gnl|rheMac2|chr11 (79418495-79418698) |
| |
|
366-906, gnl|bosTau2|chr5 (9204964-9205494) |
|
366-906, gnl|Hg17|chr12 (81346700-81347266) |
