Non-Coding RNA Search

Lng1-LNG010023H05

Sequence:


               
               AAAAAAAAAAAAAAAAAGTGGGAATTTTGCTGGTATGAGGATGGGATTGGCAGTGTTCCT
TTAAGCCGGCTTGGAAAAATATTTCTTAAAAGACTGTTAACTTTTAAAAGGCATTAGCCA
CCTAGCAAATTTTCCTAGATGTCTCCTAAGGCCCTGCAGCTTTCCCGATTAAGAATACGT
GAACCCATTTTTAGAGACATGGCCATCAGAACACATAGATGGAAGTGGGATTATGTACAT
TTATTCCAGGGCTGTTAGAGCTACAAATGGTAGACATGGGTTGGGTTGTTGGGTCTGCAC
TTTTGCTTGCTGTCATCTTGTTATCCCATTAGCCCGCTGTTTCATTAGTAAAACACATGG
CCAGTGAATCAGCCTTTAGGGGGATAGGCCTATTTCTCTCTCTCTCTCTATTTCCCAGTG
TCATCCATGGTCATGGGATGCCGTAAATTCCTCCCTTTCAAATGGGAAAGGAGACCAATA
CAGTTCATGTGGTTCATTGTACTCAAGAACCTAAACTTGGCTGAACACAACTCAATGGTT
GATCCAAACACTGTTTTTCCTTTCTGTAAAGTGATCAAGGGAGCATTTATCAGGTCTTGA
CAAGATGTCAGAAAAGGCAAATTAAGTCATTTCCCCAAAGTCTATCCTCTAAAGCAGGAA
CCCCCCCCCTCCCCGCCTCAGCCCCTGCAAACCCACAGGGGGGCTGTGCTTTTAAGTAAC
AGTGGACGTGGTACATGCCCATCTAGCTATACTTTGTTTAGGACTTTAAATATTGGTAGC
AGGTCTGACAAAGGGGCTTGATGCGGGTATCAGCTCAAAGGGCCTCAACGACAGTGACAC
AGTGACATAGGGCTGGGGCAGGAATGAGACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAGTGGGAATTTTGCTGGTATGAGGATGGGATTGGCAGTGTTCCT
TTAAGCCGGCTTGGAAAAATATTTCTTAAAAGACTGTTAACTTTTAAAAGGCATTAGCCA
CCTAGCAAATTTTCCTAGATGTCTCCTAAGGCCCTGCAGCTTTCCCGATTAAGAATACGT
GAACCCATTTTTAGAGACATGGCCATCAGAACACATAGATGGAAGTGGGATTATGTACAT
TTATTCCAGGGCTGTTAGAGCTACAAATGGTAGACATGGGTTGGGTTGTTGGGTCTGCAC
TTTTGCTTGCTGTCATCTTGTTATCCCATTAGCCCGCTGTTTCATTAGTAAAACACATGG
CCAGTGAATCAGCCTTTAGGGGGATAGGCCTATTTCTCTCTCTCTCTCTATTTCCCAGTG
TCATCCATGGTCATGGGATGCCGTAAATTCCTCCCTTTCAAATGGGAAAGGAGACCAATA
CAGTTCATGTGGTTCATTGTACTCAAGAACCTAAACTTGGCTGAACACAACTCAATGGTT
GATCCAAACACTGTTTTTCCTTTCTGTAAAGTGATCAAGGGAGCATTTATCAGGTCTTGA
CAAGATGTCAGAAAAGGCAAATTAAGTCATTTCCCCAAAGTCTATCCTCTAAAGCAGGAA
CCCCCCCCCTCCCCGCCTCAGCCCCTGCAAACCCACAGGGGGGCTGTGCTTTTAAGTAAC
AGTGGACGTGGTACATGCCCATCTAGCTATACTTTGTTTAGGACTTTAAATATTGGTAGC
AGGTCTGACAAAGGGGCTTGATGCGGGTATCAGCTCAAAGGGCCTCAACGACAGTGACAC
AGTGACATAGGGCTGGGGCAGGAATGAGACTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-140, - strand, RNAz p=0.689141
               

               
               376-479, + strand, RNAz p=0.947255

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-140, - strand, RNAz p=0.689141
               

               
               376-479, + strand, RNAz p=0.947255

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-664, gnl|bosTau2|chr11 (29347418-29346745)
               

               
               1-664, gnl|canFam2|chr10 (63738618-63739227)
               

               
               1-664, gnl|dasNov1|scaffold_53 (174963-175599)
               

               
               1-664, gnl|echTel1|scaffold_320552 (76052-75489)
               

               
               1-664, gnl|hg17|chr2 (60592459-60593057)
               

               
               1-664, gnl|Hg17|chr2 (60593237-60592553)
               

               
               1-664, gnl|loxAfr1|scaffold_1712 (9376-8810)
               

               
               1-664, gnl|mm7|chr11 (24123763-24123199)
               

               
               1-664, gnl|Mm7|chr11 (24123041-24123662)
               

               
               1-664, gnl|monDom2|scaffold_1 (25083937-25084538)
               

               
               1-664, gnl|oryCun1|scaffold_212573 (113973-114479)
               

               
               1-664, gnl|panTro1|chr12 (62772581-62773180)
               

               
               1-664, gnl|rheMac2|chr13 (60606211-60606808)
               

               
               1-664, gnl|rn3|chr14 (105114100-105113545)
               


               
               679-838, gnl|bosTau2|chr11 (29346754-29346589)
               

               
               679-838, gnl|Hg17|chr2 (60592563-60592404)
               

               
               679-838, gnl|Mm7|chr11 (24123653-24123807)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-664, gnl|bosTau2|chr11 (29347418-29346745)
               

               
               1-664, gnl|canFam2|chr10 (63738618-63739227)
               

               
               1-664, gnl|dasNov1|scaffold_53 (174963-175599)
               

               
               1-664, gnl|echTel1|scaffold_320552 (76052-75489)
               

               
               1-664, gnl|hg17|chr2 (60592459-60593057)
               

               
               1-664, gnl|Hg17|chr2 (60593237-60592553)
               

               
               1-664, gnl|loxAfr1|scaffold_1712 (9376-8810)
               

               
               1-664, gnl|mm7|chr11 (24123763-24123199)
               

               
               1-664, gnl|Mm7|chr11 (24123041-24123662)
               

               
               1-664, gnl|monDom2|scaffold_1 (25083937-25084538)
               

               
               1-664, gnl|oryCun1|scaffold_212573 (113973-114479)
               

               
               1-664, gnl|panTro1|chr12 (62772581-62773180)
               

               
               1-664, gnl|rheMac2|chr13 (60606211-60606808)
               

               
               1-664, gnl|rn3|chr14 (105114100-105113545)
               


               
               679-838, gnl|bosTau2|chr11 (29346754-29346589)
               

               
               679-838, gnl|Hg17|chr2 (60592563-60592404)
               

               
               679-838, gnl|Mm7|chr11 (24123653-24123807)

	41-140, - strand, RNAz p=0.689141
	376-479, + strand, RNAz p=0.947255

	1-664, gnl\|bosTau2\|chr11 (29347418-29346745)
	1-664, gnl\|canFam2\|chr10 (63738618-63739227)
	1-664, gnl\|dasNov1\|scaffold_53 (174963-175599)
	1-664, gnl\|echTel1\|scaffold_320552 (76052-75489)
	1-664, gnl\|hg17\|chr2 (60592459-60593057)
	1-664, gnl\|Hg17\|chr2 (60593237-60592553)
	1-664, gnl\|loxAfr1\|scaffold_1712 (9376-8810)
	1-664, gnl\|mm7\|chr11 (24123763-24123199)
	1-664, gnl\|Mm7\|chr11 (24123041-24123662)
	1-664, gnl\|monDom2\|scaffold_1 (25083937-25084538)
	1-664, gnl\|oryCun1\|scaffold_212573 (113973-114479)
	1-664, gnl\|panTro1\|chr12 (62772581-62773180)
	1-664, gnl\|rheMac2\|chr13 (60606211-60606808)
	1-664, gnl\|rn3\|chr14 (105114100-105113545)

	679-838, gnl\|bosTau2\|chr11 (29346754-29346589)
	679-838, gnl\|Hg17\|chr2 (60592563-60592404)
	679-838, gnl\|Mm7\|chr11 (24123653-24123807)