Non-Coding RNA Search

Lng1-LNG010025D09

Sequence:


               
               ATATATCTCTCAGTTATTTTGGGAGACCTGACATTGGATCTCCCTAAGTTTTTATTTTGT
CCGAAAGTAAAACTTGGACATTACAGAACATAATGGACTATAAAGAAGTGGGGGCAGGGC
TGACAGGATGCAGTCGGCTCTAAGCTGCACGCCCTCCCTGCTGCCAGCGTGCTCTGACCT
CGGGAAGTCACTGCATCCTTTGCAAACCTAGGACGTGGGACTAGGTACTCTTTAATCCCA
TTCCAGGACCGAGAGGCACTTAATCGATTCACATGGACCATAGCAGAGGTCACTCTTGCC
CAAGAGGCCCCCCTTTGTCCCTCTGCATGAGGACTCAGTGACTCTTTGGCTGGGCTGCAT
TGGCTCCCTGGGATAACAGGCTCTTTCTCCCTTCTGGATTTGATTCACTAGTCCTTCCAA
TAGTCCAGCCACCTGGAGGGATGCAGTTTGACTCGTTTAGCCTCAAAATGATGCCAGCGG
GTCCTCCATGCCTGCCTGATAGTTGAGTGCCTCTTGAATCAACCTCAGCATATTCTGTAA
TTATCTGCTTGATTTGGGGGTTATGTAGCACTTGCAGTTTTAGCTCTCTCCGCTTACCCA
CAAACCAGACTGCCAAACTCCCAGATCATAAAACAAAGCGTAAGCACCTGGATCATGACC
CAGCTCTTTTCCTGTTCTTCTTTTTGAGACTTCCCCAACAGGAAAGGCTCTGGGTAATTG
ATAGAGATTATCCCTGATTCCCTTAATGTAACCTTTTTACTCTTTCCTTTTCCTGGGATT
AAGCTGTTCCTTTGCAAGAAGTCCTTTTCTTAATGACACAGTCATCGACCTATTATTGAC
CAAAGGAAAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATATCTCTCAGTTATTTTGGGAGACCTGACATTGGATCTCCCTAAGTTTTTATTTTGT
CCGAAAGTAAAACTTGGACATTACAGAACATAATGGACTATAAAGAAGTGGGGGCAGGGC
TGACAGGATGCAGTCGGCTCTAAGCTGCACGCCCTCCCTGCTGCCAGCGTGCTCTGACCT
CGGGAAGTCACTGCATCCTTTGCAAACCTAGGACGTGGGACTAGGTACTCTTTAATCCCA
TTCCAGGACCGAGAGGCACTTAATCGATTCACATGGACCATAGCAGAGGTCACTCTTGCC
CAAGAGGCCCCCCTTTGTCCCTCTGCATGAGGACTCAGTGACTCTTTGGCTGGGCTGCAT
TGGCTCCCTGGGATAACAGGCTCTTTCTCCCTTCTGGATTTGATTCACTAGTCCTTCCAA
TAGTCCAGCCACCTGGAGGGATGCAGTTTGACTCGTTTAGCCTCAAAATGATGCCAGCGG
GTCCTCCATGCCTGCCTGATAGTTGAGTGCCTCTTGAATCAACCTCAGCATATTCTGTAA
TTATCTGCTTGATTTGGGGGTTATGTAGCACTTGCAGTTTTAGCTCTCTCCGCTTACCCA
CAAACCAGACTGCCAAACTCCCAGATCATAAAACAAAGCGTAAGCACCTGGATCATGACC
CAGCTCTTTTCCTGTTCTTCTTTTTGAGACTTCCCCAACAGGAAAGGCTCTGGGTAATTG
ATAGAGATTATCCCTGATTCCCTTAATGTAACCTTTTTACTCTTTCCTTTTCCTGGGATT
AAGCTGTTCCTTTGCAAGAAGTCCTTTTCTTAATGACACAGTCATCGACCTATTATTGAC
CAAAGGAAAGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               605-848, - strand, RNAz p=0.990687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-848, - strand, RNAz p=0.990687

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               656-726, + strand, RNAmicro p=0.995378

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               656-726, + strand, RNAmicro p=0.995378

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-560, gnl|bosTau2|chr17 (41162528-41163086)
               

               
               1-560, gnl|Hg17|chr22 (27743706-27744452)
               


               
               569-848, gnl|bosTau2|chr17 (41163298-41163579)
               

               
               569-848, gnl|Hg17|chr22 (27744468-27744745)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr17 (41162528-41163086)
               

               
               1-560, gnl|Hg17|chr22 (27743706-27744452)
               


               
               569-848, gnl|bosTau2|chr17 (41163298-41163579)
               

               
               569-848, gnl|Hg17|chr22 (27744468-27744745)

	1-560, gnl\|bosTau2\|chr17 (41162528-41163086)
	1-560, gnl\|Hg17\|chr22 (27743706-27744452)

	569-848, gnl\|bosTau2\|chr17 (41163298-41163579)
	569-848, gnl\|Hg17\|chr22 (27744468-27744745)