Non-Coding RNA Search

Lng1-LNG010025G06

Sequence:


               
               TTGGAAAATCTTACGAGCAGAGCAAGCCATGGAACAATTACTGGAAAAAACTGAGGCACA
CCACACGTTTCTTTTCCCCAAAGCACTTTGTCTAAATTCGGGCTGGTTGATGACGCAGCT
CGCAGGCGAGCTCCCAAAGGCCTCCTGAGCAAAGGCTATCTGCTGAGGCCGGAGGCGCTG
GTGCCAGCTGGAGGTGAGAGGCCTGGGCCCTGGGCCCTGCTTTTGGCCACCTCACAGGAA
GGGATGAAACCTTACTCTCCTTGGCCCAGGAGGCAGAAGGAAGGCGAGACTGTTCTGGGA
AGGGGCCGCACAGCCAGTTAGGCTGCTCCACCGTGCTGCCAGGTGGCAGTGACGTGGGCT
GCACAGCACTGGGTGTGCTGGCCGTATGTCCTGTGTGGTGACACAGTGCCCCCAGGGAAA
GGCTTCTGCCAGCAAGGGGCCACTTCTCAAGCACTTGAAGCTGGAGCACTGTGGTGCTGC
ACCCAGGTCAAGAACCACAGGCCTGAGGGCAGCAGCATCCTTGCTTGGCCACGCTTCGCC
CAAGTGGAAGGTTAGCAATGGGCTTCTGGGCTCAGCCCTGCGGTGCCTGCCTGACCTGGG
TGCCCAAGTGTGGCCCTCCGGACTGCAGTCTGAGTGGTAAAGAGCACCTGGGCCTCCCTC
CCTCTGGCTCTTTTCCCTTGATTCCATCTTTAAGTATCTCCTTTCCCCAGCTTCAAAACA
AGACTAATTTTCTAACCTTTCAATTCTTGTTGCCTACATGATTACAGCCAAGGCTAAAGG
GTCCCTCAGGTTGGGCCTTTGGGCCTGGGCTCAGCTCANGCCATATAACTGGGCTGTAAG
TTCTCCTGAGGGCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAAAATCTTACGAGCAGAGCAAGCCATGGAACAATTACTGGAAAAAACTGAGGCACA
CCACACGTTTCTTTTCCCCAAAGCACTTTGTCTAAATTCGGGCTGGTTGATGACGCAGCT
CGCAGGCGAGCTCCCAAAGGCCTCCTGAGCAAAGGCTATCTGCTGAGGCCGGAGGCGCTG
GTGCCAGCTGGAGGTGAGAGGCCTGGGCCCTGGGCCCTGCTTTTGGCCACCTCACAGGAA
GGGATGAAACCTTACTCTCCTTGGCCCAGGAGGCAGAAGGAAGGCGAGACTGTTCTGGGA
AGGGGCCGCACAGCCAGTTAGGCTGCTCCACCGTGCTGCCAGGTGGCAGTGACGTGGGCT
GCACAGCACTGGGTGTGCTGGCCGTATGTCCTGTGTGGTGACACAGTGCCCCCAGGGAAA
GGCTTCTGCCAGCAAGGGGCCACTTCTCAAGCACTTGAAGCTGGAGCACTGTGGTGCTGC
ACCCAGGTCAAGAACCACAGGCCTGAGGGCAGCAGCATCCTTGCTTGGCCACGCTTCGCC
CAAGTGGAAGGTTAGCAATGGGCTTCTGGGCTCAGCCCTGCGGTGCCTGCCTGACCTGGG
TGCCCAAGTGTGGCCCTCCGGACTGCAGTCTGAGTGGTAAAGAGCACCTGGGCCTCCCTC
CCTCTGGCTCTTTTCCCTTGATTCCATCTTTAAGTATCTCCTTTCCCCAGCTTCAAAACA
AGACTAATTTTCTAACCTTTCAATTCTTGTTGCCTACATGATTACAGCCAAGGCTAAAGG
GTCCCTCAGGTTGGGCCTTTGGGCCTGGGCTCAGCTCANGCCATATAACTGGGCTGTAAG
TTCTCCTGAGGGCTGA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               385-503, + strand, RNAz p=0.804824
               

               
               527-645, - strand, RNAz p=0.750076
               

               
               714-821, - strand, RNAz p=0.940222

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-503, + strand, RNAz p=0.804824
               

               
               527-645, - strand, RNAz p=0.750076
               

               
               714-821, - strand, RNAz p=0.940222

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-821, gnl|bosTau2|chr10 (6320788-6321614)
               

               
               1-821, gnl|canFam2|chr30 (34351907-34352568)
               

               
               1-821, gnl|dasNov1|scaffold_87100 (3581-4222)
               

               
               1-821, gnl|echTel1|scaffold_302777 (12064-12642)
               

               
               1-821, gnl|hg17|chr15 (65268363-65269013)
               

               
               1-821, gnl|Hg17|chr15 (65269258-65268421)
               

               
               1-821, gnl|loxAfr1|scaffold_43028 (5248-4603)
               

               
               1-821, gnl|mm7|chr9 (63680081-63679560)
               

               
               1-821, gnl|Mm7|chr9 (63679318-63680038)
               

               
               1-821, gnl|monDom2|scaffold_12 (45179714-45179032)
               

               
               1-821, gnl|panTro1|chr16 (65777775-65778426)
               

               
               1-821, gnl|rheMac2|chr7 (45759779-45760429)
               

               
               1-821, gnl|rn3|chr8 (67844674-67844144)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-821, gnl|bosTau2|chr10 (6320788-6321614)
               

               
               1-821, gnl|canFam2|chr30 (34351907-34352568)
               

               
               1-821, gnl|dasNov1|scaffold_87100 (3581-4222)
               

               
               1-821, gnl|echTel1|scaffold_302777 (12064-12642)
               

               
               1-821, gnl|hg17|chr15 (65268363-65269013)
               

               
               1-821, gnl|Hg17|chr15 (65269258-65268421)
               

               
               1-821, gnl|loxAfr1|scaffold_43028 (5248-4603)
               

               
               1-821, gnl|mm7|chr9 (63680081-63679560)
               

               
               1-821, gnl|Mm7|chr9 (63679318-63680038)
               

               
               1-821, gnl|monDom2|scaffold_12 (45179714-45179032)
               

               
               1-821, gnl|panTro1|chr16 (65777775-65778426)
               

               
               1-821, gnl|rheMac2|chr7 (45759779-45760429)
               

               
               1-821, gnl|rn3|chr8 (67844674-67844144)

	385-503, + strand, RNAz p=0.804824
	527-645, - strand, RNAz p=0.750076
	714-821, - strand, RNAz p=0.940222

	1-821, gnl\|bosTau2\|chr10 (6320788-6321614)
	1-821, gnl\|canFam2\|chr30 (34351907-34352568)
	1-821, gnl\|dasNov1\|scaffold_87100 (3581-4222)
	1-821, gnl\|echTel1\|scaffold_302777 (12064-12642)
	1-821, gnl\|hg17\|chr15 (65268363-65269013)
	1-821, gnl\|Hg17\|chr15 (65269258-65268421)
	1-821, gnl\|loxAfr1\|scaffold_43028 (5248-4603)
	1-821, gnl\|mm7\|chr9 (63680081-63679560)
	1-821, gnl\|Mm7\|chr9 (63679318-63680038)
	1-821, gnl\|monDom2\|scaffold_12 (45179714-45179032)
	1-821, gnl\|panTro1\|chr16 (65777775-65778426)
	1-821, gnl\|rheMac2\|chr7 (45759779-45760429)
	1-821, gnl\|rn3\|chr8 (67844674-67844144)