Non-Coding RNA Search

Lng1-LNG010026F04

Sequence:


               
               ATACAATTCAATGCACATTTTAAAAGGTCCCAGAGAATAGCATACTTCAACTATGTTGTC
TGTTTTCATTAATTGGTCTGTGACTTGTAGTTGAGTGGTTCAATTAGAAGATGTTTAATA
TCCTTTCAAAATCCAAGGTGTAAAAACTTTATGCCCATAATAGTTGCAGTGAGCAAATGG
ATTCCATGTGGTCATGTAACAAGCTAGTCTAATCAATGTGCCACATAACCACTGTTTACA
GGTATTAACATGACTGTTACTACTAAAGTTTTTGCATTAGTCATAAAAATGTTTCTGAAG
GCAATAGGTTTTGACAGGGTGAAAGAGTAGGAAATCACAGTTCCAGATTTTTGAAACAAC
TTATAAAACTGAAAGAATTTTGGTTTGGCTGCCATGCGTGGGTGTAGGCAATGAGCCCAG
GACAAGTCAGACCAGATTGCTGGCCACATGAACTGGAGCTGATGTTGATCCCTAGAGGAT
GGAATGGGGGCAGAAAATGTGCTCCGGGAGGCCTGCAGAGGTGACATTAACTAAAGAGAG
TAAGGAGGATGAGAGACAAAATCAGGGAAATCTTACCACCCACAAGTCTTTATAGTAGGA
TCTGGACTCACTCCAAATGGGAGTGGGAACAATGAATCCAAAGAGAATCCACTGTGAAAC
CTTCCAAGGAGGGTCCTGGTCCTGGCTGCAGATGATCAGATCCCTGGCTTGCCCGCCTTG
GTCATTGGGCATGTGGTGTATGCGTATCGAGAAGGCTTACTGACAAAGAACCGGGCACAT
ACGTTACAAATCAACGGGTGGAAAGCCTCAAAATGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACAATTCAATGCACATTTTAAAAGGTCCCAGAGAATAGCATACTTCAACTATGTTGTC
TGTTTTCATTAATTGGTCTGTGACTTGTAGTTGAGTGGTTCAATTAGAAGATGTTTAATA
TCCTTTCAAAATCCAAGGTGTAAAAACTTTATGCCCATAATAGTTGCAGTGAGCAAATGG
ATTCCATGTGGTCATGTAACAAGCTAGTCTAATCAATGTGCCACATAACCACTGTTTACA
GGTATTAACATGACTGTTACTACTAAAGTTTTTGCATTAGTCATAAAAATGTTTCTGAAG
GCAATAGGTTTTGACAGGGTGAAAGAGTAGGAAATCACAGTTCCAGATTTTTGAAACAAC
TTATAAAACTGAAAGAATTTTGGTTTGGCTGCCATGCGTGGGTGTAGGCAATGAGCCCAG
GACAAGTCAGACCAGATTGCTGGCCACATGAACTGGAGCTGATGTTGATCCCTAGAGGAT
GGAATGGGGGCAGAAAATGTGCTCCGGGAGGCCTGCAGAGGTGACATTAACTAAAGAGAG
TAAGGAGGATGAGAGACAAAATCAGGGAAATCTTACCACCCACAAGTCTTTATAGTAGGA
TCTGGACTCACTCCAAATGGGAGTGGGAACAATGAATCCAAAGAGAATCCACTGTGAAAC
CTTCCAAGGAGGGTCCTGGTCCTGGCTGCAGATGATCAGATCCCTGGCTTGCCCGCCTTG
GTCATTGGGCATGTGGTGTATGCGTATCGAGAAGGCTTACTGACAAAGAACCGGGCACAT
ACGTTACAAATCAACGGGTGGAAAGCCTCAAAATGAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               589-698, + strand, RNAz p=0.999203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-698, + strand, RNAz p=0.999203

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               589-698, DB785118 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB785118.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               589-698, DB785118 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB785118.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               88-818, gnl|bosTau2|chr4 (66488185-66488926)
               

               
               88-818, gnl|Hg17|chr13 (32763249-32762512)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-818, gnl|bosTau2|chr4 (66488185-66488926)
               

               
               88-818, gnl|Hg17|chr13 (32763249-32762512)

	88-818, gnl\|bosTau2\|chr4 (66488185-66488926)
	88-818, gnl\|Hg17\|chr13 (32763249-32762512)