Non-Coding RNA Search

Lng1-LNG010027C06

Sequence:


               
               ACTCACAGCTGAATACTCTGCAGTGGGTGTCATGTTCAAAGGAGTTAACAACCAGGATGC
TTGGGTGGCAAATGGTCAGAATGGACAGGGGCCAAAGGTACAGGGTCTAGCATGGGGGGC
GGGGGGTATTTGATAACTAGTGAATGAAGGCACAAATGAGCAAGTGACTAGACGGATGGA
GGACGGATGGCCGGAGAGATGGATGGAGATGGACGGAGAGATGGACGGAGAGATGGATGG
CCGGGTAAGTAAACAGGGCACACACAGCAGGCCTGGGACTTACCAGGGATGCCTGGGGCC
CTGAGAAGGTGGCCCAGGGAAGGGAAGGGTCCGCCCATACTCACCAGCCAGACGGTGCAG
CTGCAGCCTCTCCTGCTCGGCCCGACTTTCATTTCCCATCCTCTCAGTCTGAGGACGCTC
CTTCCCCCCGGGGGAACTGGGTGAGGAGGAGGGGCAGACGGCCCCTGGTCCCCACAGAGG
GGGGGCTCCCAGGCTCCATCTGTCCCGCCACAAAGGGGCTTTGTCCTCAGTGCTGAGAGC
CCGGGGCAGACCGGAAGCTGCCCCTCAGCCGCCCAGCAGGTCCCACCACCCCCAGTCAGC
TGGGCCAATGGCCTTAAAGCCAGATCCCAGAGGCTGGCGCAGTGTTGGGCACGGCCCTCT
AAAATCTCATGAATCCTCCCTAGAGCCCTAGGAGAGAGGTTCCAGGATGCCCCTCTGTTT
TCACAGATGGGGAAACTGAGGCAAAGTCACTTGGCCAAGGTCTCCCAGCCAGTGAAGAAC
AAAGCTGGGATTCAAATCCAGGCCCACCTGACCACTGCTCTNCACTCTCCTGGTCTGGAG
TA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCACAGCTGAATACTCTGCAGTGGGTGTCATGTTCAAAGGAGTTAACAACCAGGATGC
TTGGGTGGCAAATGGTCAGAATGGACAGGGGCCAAAGGTACAGGGTCTAGCATGGGGGGC
GGGGGGTATTTGATAACTAGTGAATGAAGGCACAAATGAGCAAGTGACTAGACGGATGGA
GGACGGATGGCCGGAGAGATGGATGGAGATGGACGGAGAGATGGACGGAGAGATGGATGG
CCGGGTAAGTAAACAGGGCACACACAGCAGGCCTGGGACTTACCAGGGATGCCTGGGGCC
CTGAGAAGGTGGCCCAGGGAAGGGAAGGGTCCGCCCATACTCACCAGCCAGACGGTGCAG
CTGCAGCCTCTCCTGCTCGGCCCGACTTTCATTTCCCATCCTCTCAGTCTGAGGACGCTC
CTTCCCCCCGGGGGAACTGGGTGAGGAGGAGGGGCAGACGGCCCCTGGTCCCCACAGAGG
GGGGGCTCCCAGGCTCCATCTGTCCCGCCACAAAGGGGCTTTGTCCTCAGTGCTGAGAGC
CCGGGGCAGACCGGAAGCTGCCCCTCAGCCGCCCAGCAGGTCCCACCACCCCCAGTCAGC
TGGGCCAATGGCCTTAAAGCCAGATCCCAGAGGCTGGCGCAGTGTTGGGCACGGCCCTCT
AAAATCTCATGAATCCTCCCTAGAGCCCTAGGAGAGAGGTTCCAGGATGCCCCTCTGTTT
TCACAGATGGGGAAACTGAGGCAAAGTCACTTGGCCAAGGTCTCCCAGCCAGTGAAGAAC
AAAGCTGGGATTCAAATCCAGGCCCACCTGACCACTGCTCTNCACTCTCCTGGTCTGGAG
TA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               219-334, - strand, RNAz p=0.763555
               

               
               396-550, - strand, RNAz p=0.979468
               

               
               671-829, - strand, RNAz p=0.99724

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-334, - strand, RNAz p=0.763555
               

               
               396-550, - strand, RNAz p=0.979468
               

               
               671-829, - strand, RNAz p=0.99724

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-836, gnl|bosTau2|chr13 (49366313-49367179)
               

               
               1-836, gnl|Hg17|chr20 (35419381-35418638)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-836, gnl|bosTau2|chr13 (49366313-49367179)
               

               
               1-836, gnl|Hg17|chr20 (35419381-35418638)

	219-334, - strand, RNAz p=0.763555
	396-550, - strand, RNAz p=0.979468
	671-829, - strand, RNAz p=0.99724

	1-836, gnl\|bosTau2\|chr13 (49366313-49367179)
	1-836, gnl\|Hg17\|chr20 (35419381-35418638)