Non-Coding RNA Search

Lng1-LNG010028E07

Sequence:


               
               TTATTTTTTTGATTTTTGTTGTTTTTGCCTGTGAGCAGGACTCCCATTTTCCAAACCCAA
AGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCTTGGAAGGTAGAGAAAGAAAGTCCTGG
AAGCTTCTCCACAGGTGAGTGGGTGGGGACTCTGCAGGCAGAGGGTGGTGAAGGAGCTGG
GGTGCGGCTTGGAGGTGTTGCTGGGGATGTTTCTGCAGGTCCTCTGGAAGTGGTGGAGTA
GGCACGCTTAGGCCCCGTCATGAGACTCCTCTTGGTCTCTGGTAATCAATTCACAAGTAA
TCACTCTCAGGACTTGTTTTGTTTTGTTTTTTGTCTTTTTAGGACCACATCTGAGACATA
CAgagattcccaggctaggggtcccatcagagctgtagccgctggcctacgccacagcca
cagcaatgccagatcccagtcacacctgtgacctgtaccacagctcacggcaatgccaga
ttcttaactcactgagggacatcagggatcgaacctgcatccttgtggatactagtcaga
ttcgtttccgctgagccaagatgggaTATCCAGGACTTTTTTTTCTTATTCTTTCCTGTT
CTTTCAGAGAAGGGCTACATTTTCATGTACTCATTCATCAGACAAAGTGCATTTAAGGAA
TTGCAGATGATTCATCCTGAATGAAGCCCAGGATGTGTGGGAAAGAGATGAGGACAGAAA
TCAGATTAGAAAGCTGCGGGGCAGGGGGTCGAGTGGAGTGCTTTGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATTTTTTTGATTTTTGTTGTTTTTGCCTGTGAGCAGGACTCCCATTTTCCAAACCCAA
AGTGATCTCCCTGTTGCAGCAAGGAGAAGATCCTTGGAAGGTAGAGAAAGAAAGTCCTGG
AAGCTTCTCCACAGGTGAGTGGGTGGGGACTCTGCAGGCAGAGGGTGGTGAAGGAGCTGG
GGTGCGGCTTGGAGGTGTTGCTGGGGATGTTTCTGCAGGTCCTCTGGAAGTGGTGGAGTA
GGCACGCTTAGGCCCCGTCATGAGACTCCTCTTGGTCTCTGGTAATCAATTCACAAGTAA
TCACTCTCAGGACTTGTTTTGTTTTGTTTTTTGTCTTTTTAGGACCACATCTGAGACATA
CAgagattcccaggctaggggtcccatcagagctgtagccgctggcctacgccacagcca
cagcaatgccagatcccagtcacacctgtgacctgtaccacagctcacggcaatgccaga
ttcttaactcactgagggacatcagggatcgaacctgcatccttgtggatactagtcaga
ttcgtttccgctgagccaagatgggaTATCCAGGACTTTTTTTTCTTATTCTTTCCTGTT
CTTTCAGAGAAGGGCTACATTTTCATGTACTCATTCATCAGACAAAGTGCATTTAAGGAA
TTGCAGATGATTCATCCTGAATGAAGCCCAGGATGTGTGGGAAAGAGATGAGGACAGAAA
TCAGATTAGAAAGCTGCGGGGCAGGGGGTCGAGTGGAGTGCTTTGGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               13-160, - strand, RNAz p=0.865969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               13-160, - strand, RNAz p=0.865969

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               13-342, gnl|bosTau2|chr16 (14644363-14644024)
               

               
               13-342, gnl|Hg17|chr5 (178085105-178084780)
               


               
               571-767, gnl|bosTau2|chr16 (14644059-14643862)
               

               
               571-767, gnl|Hg17|chr5 (178084814-178084618)
               

               
               571-767, gnl|Mm7|chr11 (51018886-51019066)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-342, gnl|bosTau2|chr16 (14644363-14644024)
               

               
               13-342, gnl|Hg17|chr5 (178085105-178084780)
               


               
               571-767, gnl|bosTau2|chr16 (14644059-14643862)
               

               
               571-767, gnl|Hg17|chr5 (178084814-178084618)
               

               
               571-767, gnl|Mm7|chr11 (51018886-51019066)

	13-342, gnl\|bosTau2\|chr16 (14644363-14644024)
	13-342, gnl\|Hg17\|chr5 (178085105-178084780)

	571-767, gnl\|bosTau2\|chr16 (14644059-14643862)
	571-767, gnl\|Hg17\|chr5 (178084814-178084618)
	571-767, gnl\|Mm7\|chr11 (51018886-51019066)