Non-Coding RNA Search

Lng1-LNG010030C06

Sequence:


               
               GGTTACACGATTCCCTTTGGAAAACCTTCCTGTGGCTTTGCCCAGTGGGGAAGGAGCAGC
AGGGGCCCCAGCCTCCAGGGAAGTCACCCCCTAAAGTTAGGCAGCTCCTTGGCTCCTCCT
CCTCCTGACAAACCCAGGCCAGGCCCGTTCCTTTCCACCTGGCTCTCAGCCAGGGGCTGG
CCGCTCTCCCCAGCAAGTCCCCTACAGGCCTGAGTCCACATAGGCTCATCCTTCATGAAC
CCAAGCATCGTCTATTCACGGGTAACTTTCCGTCTCCTTGAGAGGACAGCTTATCTCCGG
GGCCTCCCACTTCCTGCCTGAGGAGGTCACCTGGTCAGCCCTCTTCAGCAAAACACCATT
TTTCATTAGCAGGGATGAAAAATGCCTGTGTGTCACCACAAGGTGATCAGTTTGGATCGA
TGGAGCCTAGAAATCATGTTCCAAATTCCTTCTATTGCAAGTTCTAGTTCCCCTAACAAA
GGACTCTGAACTTCCCCTCTCCTGGAAGGGGAAGCTCTGAATTTAGCCAAAAGGCATATT
TTCTGGGGCAGCAATTGAAAAAGAGTAAGGGGTAGGAAATTTCAAAGCAGAGATGTGATA
GCTGGAATTTTTTTTTAATCGTTTTTCTTTTCTTTTGAGGCATAATTGCACATGGCAAAA
TGAATAGATCTGAAATGCATGGTTCAATGAGTTTGACAAATGTCTGTATCAATGTAACCT
ATACCCCATCACCCTAGAAAGTTCCTTCACGCCCCTTTCCAGTCAATTCCATCCCTCTCT
CCTAGAGGCAGCCACGGTTGATTTCTGTCCCCCCTGGTAGCATGGATTTTTAGAGTGGAC
TTAAGATCTGTAACGCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTACACGATTCCCTTTGGAAAACCTTCCTGTGGCTTTGCCCAGTGGGGAAGGAGCAGC
AGGGGCCCCAGCCTCCAGGGAAGTCACCCCCTAAAGTTAGGCAGCTCCTTGGCTCCTCCT
CCTCCTGACAAACCCAGGCCAGGCCCGTTCCTTTCCACCTGGCTCTCAGCCAGGGGCTGG
CCGCTCTCCCCAGCAAGTCCCCTACAGGCCTGAGTCCACATAGGCTCATCCTTCATGAAC
CCAAGCATCGTCTATTCACGGGTAACTTTCCGTCTCCTTGAGAGGACAGCTTATCTCCGG
GGCCTCCCACTTCCTGCCTGAGGAGGTCACCTGGTCAGCCCTCTTCAGCAAAACACCATT
TTTCATTAGCAGGGATGAAAAATGCCTGTGTGTCACCACAAGGTGATCAGTTTGGATCGA
TGGAGCCTAGAAATCATGTTCCAAATTCCTTCTATTGCAAGTTCTAGTTCCCCTAACAAA
GGACTCTGAACTTCCCCTCTCCTGGAAGGGGAAGCTCTGAATTTAGCCAAAAGGCATATT
TTCTGGGGCAGCAATTGAAAAAGAGTAAGGGGTAGGAAATTTCAAAGCAGAGATGTGATA
GCTGGAATTTTTTTTTAATCGTTTTTCTTTTCTTTTGAGGCATAATTGCACATGGCAAAA
TGAATAGATCTGAAATGCATGGTTCAATGAGTTTGACAAATGTCTGTATCAATGTAACCT
ATACCCCATCACCCTAGAAAGTTCCTTCACGCCCCTTTCCAGTCAATTCCATCCCTCTCT
CCTAGAGGCAGCCACGGTTGATTTCTGTCCCCCCTGGTAGCATGGATTTTTAGAGTGGAC
TTAAGATCTGTAACGCTGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               84-225, - strand, RNAz p=0.709879

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-225, - strand, RNAz p=0.709879

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-860, gnl|bosTau2|chr10 (50947524-50948369)
               

               
               10-860, gnl|Hg17|chr14 (72093830-72094692)
               

               
               10-860, gnl|Mm7|chr12 (81146823-81147747)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-860, gnl|bosTau2|chr10 (50947524-50948369)
               

               
               10-860, gnl|Hg17|chr14 (72093830-72094692)
               

               
               10-860, gnl|Mm7|chr12 (81146823-81147747)

	10-860, gnl\|bosTau2\|chr10 (50947524-50948369)
	10-860, gnl\|Hg17\|chr14 (72093830-72094692)
	10-860, gnl\|Mm7\|chr12 (81146823-81147747)