Non-Coding RNA Search

Lng1-LNG010031F05

Sequence:


               
               ATACAATGTCTTTCCTCTATGATAAAAGAAAAGTGCCTGGTGGAGATGGGATACTTCTTA
CTTCCTGAGAAGAGTGGAGCCTGAGTTACCTTGGGCTTCACTCCCCAGCCCTCAAGGAAC
CCTGCTCCTGCTGGGGACAGTCCTTCACTCAGCTGGCAGCCAGAGCCCCCTCACCTCCAG
CCACCCCCTCGTGATCCGACTTGCTCAACAGCACCCAGTAGCATCTATTATTTCAGGACC
TCTGCAAGGATAGTGGGGCTCTGGCCTCTTTAGAGCACAGATCAAAACTGGGTGTGCTTT
TTCCTTCCAGAACTCAGACCCCAGGACATGCCCTCCCTTTGCCTCCCTCCTGCCACAGGT
ATTAACAGGCCCAGTCAGACCGCACAGCCAGCCCTTCTTAGAAGAAATCTTAAGTTTCTT
CCATAAGCAAATGAATGTAGGCTTTGCTTTGGTTAGTCCTTAAGCAAAGAGATGTTTTCT
ATAGTTCTAGTTCCTAGGTGCATTCTGTAAATGCTTTTTATGAACATACTTAATAAATAG
TTGTTCCAGACATGTTTAAAGATCTCACTAATTAGGAACAAGTTGTAGTTACATGCCTTT
GAGACAACGTACAAAGGGGACTAGAGGAAGCAGAGTATACAGAAAGAATACATTTAAAGC
TAGAAGACCTGGATTAAGGATTCAGTTGGAGATGTATTTGATGATCATGACCAGGACAAG
AAAGTAAGGGGTAAAAGTGAGGGATGTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACAATGTCTTTCCTCTATGATAAAAGAAAAGTGCCTGGTGGAGATGGGATACTTCTTA
CTTCCTGAGAAGAGTGGAGCCTGAGTTACCTTGGGCTTCACTCCCCAGCCCTCAAGGAAC
CCTGCTCCTGCTGGGGACAGTCCTTCACTCAGCTGGCAGCCAGAGCCCCCTCACCTCCAG
CCACCCCCTCGTGATCCGACTTGCTCAACAGCACCCAGTAGCATCTATTATTTCAGGACC
TCTGCAAGGATAGTGGGGCTCTGGCCTCTTTAGAGCACAGATCAAAACTGGGTGTGCTTT
TTCCTTCCAGAACTCAGACCCCAGGACATGCCCTCCCTTTGCCTCCCTCCTGCCACAGGT
ATTAACAGGCCCAGTCAGACCGCACAGCCAGCCCTTCTTAGAAGAAATCTTAAGTTTCTT
CCATAAGCAAATGAATGTAGGCTTTGCTTTGGTTAGTCCTTAAGCAAAGAGATGTTTTCT
ATAGTTCTAGTTCCTAGGTGCATTCTGTAAATGCTTTTTATGAACATACTTAATAAATAG
TTGTTCCAGACATGTTTAAAGATCTCACTAATTAGGAACAAGTTGTAGTTACATGCCTTT
GAGACAACGTACAAAGGGGACTAGAGGAAGCAGAGTATACAGAAAGAATACATTTAAAGC
TAGAAGACCTGGATTAAGGATTCAGTTGGAGATGTATTTGATGATCATGACCAGGACAAG
AAAGTAAGGGGTAAAAGTGAGGGATGTTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-149, + strand, RNAz p=0.984314

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-149, + strand, RNAz p=0.984314

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-394, gnl|bosTau2|chr10 (37924740-37924336)
               

               
               1-394, gnl|canFam2|chr30 (27068337-27068651)
               

               
               1-394, gnl|echTel1|scaffold_309902 (5850-6144)
               

               
               1-394, gnl|hg17|chr15 (57219996-57220315)
               

               
               1-394, gnl|Hg17|chr15 (57220421-57220024)
               

               
               1-394, gnl|loxAfr1|scaffold_5865 (45854-46179)
               

               
               1-394, gnl|mm7|chr9 (70426766-70426471)
               

               
               1-394, gnl|oryCun1|scaffold_199043 (801-1063)
               

               
               1-394, gnl|rheMac2|chr7 (37511518-37511835)
               

               
               1-394, gnl|rn3|chr8 (74899028-74898743)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-394, gnl|bosTau2|chr10 (37924740-37924336)
               

               
               1-394, gnl|canFam2|chr30 (27068337-27068651)
               

               
               1-394, gnl|echTel1|scaffold_309902 (5850-6144)
               

               
               1-394, gnl|hg17|chr15 (57219996-57220315)
               

               
               1-394, gnl|Hg17|chr15 (57220421-57220024)
               

               
               1-394, gnl|loxAfr1|scaffold_5865 (45854-46179)
               

               
               1-394, gnl|mm7|chr9 (70426766-70426471)
               

               
               1-394, gnl|oryCun1|scaffold_199043 (801-1063)
               

               
               1-394, gnl|rheMac2|chr7 (37511518-37511835)
               

               
               1-394, gnl|rn3|chr8 (74899028-74898743)

	1-394, gnl\|bosTau2\|chr10 (37924740-37924336)
	1-394, gnl\|canFam2\|chr30 (27068337-27068651)
	1-394, gnl\|echTel1\|scaffold_309902 (5850-6144)
	1-394, gnl\|hg17\|chr15 (57219996-57220315)
	1-394, gnl\|Hg17\|chr15 (57220421-57220024)
	1-394, gnl\|loxAfr1\|scaffold_5865 (45854-46179)
	1-394, gnl\|mm7\|chr9 (70426766-70426471)
	1-394, gnl\|oryCun1\|scaffold_199043 (801-1063)
	1-394, gnl\|rheMac2\|chr7 (37511518-37511835)
	1-394, gnl\|rn3\|chr8 (74899028-74898743)