Non-Coding RNA Search

Lng1-LNG010034D04

Sequence:


               
               TTTTATTGTTGGAACCTCAAATCCAACCTATGCGGAATGTGTCTGTGTGGGCGGAAAGTG
AATTTTTGCAGGCTGAATATCTTGGGTTTGGAAGCAGCTTCTCAGTTTCTCCCATATTGC
AAAGCACAGCACATGTGTTCAGTTATGGATTTCCACAAAACTGGCAATCTTGAACCAATG
CACGGGTGAGGCTCCAAAAGTTCATTTGCAAGTTTGGCACTCAGAATGCATTTTCCCATA
GAAACAATGTCATAAATTAAGGACTGATTTCCAAGTCAGCCCACCAAATTCAGTTTATTT
AATTTCAGCAAATATTTATGGAATATCTACCAAGAACCCAATGTGGGATGTGAGATAACT
AGGCGATCCTGAGAGAAATCAGATGCCATTCTTGGTCTTAAGGAATTCACAAGTCAGCCA
TGGAGACAGACACGTCAATAGTCGATGTTCATTCATTCAGTTGTACATCTGATCAATGGA
TATTTATTGAGCACCTACAGTATGGCGAGCCCTAGGCAAGGTGCTTTCCATGCTGTTCTT
TCTTGCCCACATGGAGCTTGCAGTCTAACTTGTATTAGACAAGTTTCTGCTCCAATAATT
CTGTGTTAACAGATTCTTAATGGCTTACAAGCATAACAGTTTTTTTTTTTTTTCTTGCTC
ATAGGTCAGCTCCAGCAAGGCGGGGGGTGAGGGTGGGGTGGGGCGCTCTTCATCAAGCGG
CAGGAAGTGAATTTGATTCAGGTCTGCTTTACACATCTCGAATCCTGCAAATACTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTATTGTTGGAACCTCAAATCCAACCTATGCGGAATGTGTCTGTGTGGGCGGAAAGTG
AATTTTTGCAGGCTGAATATCTTGGGTTTGGAAGCAGCTTCTCAGTTTCTCCCATATTGC
AAAGCACAGCACATGTGTTCAGTTATGGATTTCCACAAAACTGGCAATCTTGAACCAATG
CACGGGTGAGGCTCCAAAAGTTCATTTGCAAGTTTGGCACTCAGAATGCATTTTCCCATA
GAAACAATGTCATAAATTAAGGACTGATTTCCAAGTCAGCCCACCAAATTCAGTTTATTT
AATTTCAGCAAATATTTATGGAATATCTACCAAGAACCCAATGTGGGATGTGAGATAACT
AGGCGATCCTGAGAGAAATCAGATGCCATTCTTGGTCTTAAGGAATTCACAAGTCAGCCA
TGGAGACAGACACGTCAATAGTCGATGTTCATTCATTCAGTTGTACATCTGATCAATGGA
TATTTATTGAGCACCTACAGTATGGCGAGCCCTAGGCAAGGTGCTTTCCATGCTGTTCTT
TCTTGCCCACATGGAGCTTGCAGTCTAACTTGTATTAGACAAGTTTCTGCTCCAATAATT
CTGTGTTAACAGATTCTTAATGGCTTACAAGCATAACAGTTTTTTTTTTTTTTCTTGCTC
ATAGGTCAGCTCCAGCAAGGCGGGGGGTGAGGGTGGGGTGGGGCGCTCTTCATCAAGCGG
CAGGAAGTGAATTTGATTCAGGTCTGCTTTACACATCTCGAATCCTGCAAATACTTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               268-385, - strand, RNAz p=0.760516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-385, - strand, RNAz p=0.760516

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-504, gnl|bosTau2|chr5 (15087322-15087828)
               

               
               1-504, gnl|Hg17|chr12 (93088094-93088619)
               

               
               1-504, gnl|Mm7|chr10 (94462235-94461719)
               


               
               573-779, gnl|bosTau2|chr5 (15088126-15088323)
               

               
               573-779, gnl|canFam2|chr15 (37330464-37330613)
               

               
               573-779, gnl|dasNov1|scaffold_356 (92910-93061)
               

               
               573-779, gnl|hg17|chr12 (93088682-93088843)
               

               
               573-779, gnl|Hg17|chr12 (93088681-93088886)
               

               
               573-779, gnl|mm7|chr10 (94461416-94461271)
               

               
               573-779, gnl|Mm7|chr10 (94461416-94461229)
               

               
               573-779, gnl|panTro1|chr10 (95351190-95351351)
               

               
               573-779, gnl|rheMac2|chr11 (95422550-95422711)
               

               
               573-779, gnl|rn3|chr7 (32115274-32115109)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr5 (15087322-15087828)
               

               
               1-504, gnl|Hg17|chr12 (93088094-93088619)
               

               
               1-504, gnl|Mm7|chr10 (94462235-94461719)
               


               
               573-779, gnl|bosTau2|chr5 (15088126-15088323)
               

               
               573-779, gnl|canFam2|chr15 (37330464-37330613)
               

               
               573-779, gnl|dasNov1|scaffold_356 (92910-93061)
               

               
               573-779, gnl|hg17|chr12 (93088682-93088843)
               

               
               573-779, gnl|Hg17|chr12 (93088681-93088886)
               

               
               573-779, gnl|mm7|chr10 (94461416-94461271)
               

               
               573-779, gnl|Mm7|chr10 (94461416-94461229)
               

               
               573-779, gnl|panTro1|chr10 (95351190-95351351)
               

               
               573-779, gnl|rheMac2|chr11 (95422550-95422711)
               

               
               573-779, gnl|rn3|chr7 (32115274-32115109)

	1-504, gnl\|bosTau2\|chr5 (15087322-15087828)
	1-504, gnl\|Hg17\|chr12 (93088094-93088619)
	1-504, gnl\|Mm7\|chr10 (94462235-94461719)

	573-779, gnl\|bosTau2\|chr5 (15088126-15088323)
	573-779, gnl\|canFam2\|chr15 (37330464-37330613)
	573-779, gnl\|dasNov1\|scaffold_356 (92910-93061)
	573-779, gnl\|hg17\|chr12 (93088682-93088843)
	573-779, gnl\|Hg17\|chr12 (93088681-93088886)
	573-779, gnl\|mm7\|chr10 (94461416-94461271)
	573-779, gnl\|Mm7\|chr10 (94461416-94461229)
	573-779, gnl\|panTro1\|chr10 (95351190-95351351)
	573-779, gnl\|rheMac2\|chr11 (95422550-95422711)
	573-779, gnl\|rn3\|chr7 (32115274-32115109)