Non-Coding RNA Search

Lng1-LNG010035C05

Sequence:


               
               TTATCCCAGGCCCTAATTTTAGTGTTTTGTTTTGTTTTGTTTTGTTTTTTAAAGAAAGCC
AACAGTACATCATGCCGTTCTTGGGGCTCCATGTGTCTGTCTGTCTGCACATGCTCGGTG
TGGGCGCCCGGGCCGTGGGCTGCAGGACAGAAGAGACCTGGGAAGTAGCCCCCCACTGAA
CACAAGCACCCCCAATTATTCTTCACTGCCCAGGATAATCTTTTAAAATCAAAGAGTAAT
TTTTATGGGACATTTTTCATTTTTGCTTGAAGTGAGGGCGCATTGGGGAGAATCTCCAGC
TTGAAAGATTAATAAATACTAGAGCAGTGGGTTATTGAAACCATGTTTTCCATCTCATTT
TCAAGGGCAAGTAAAAAAAAAAATGCAGATAGCATACACTCTCCACCACTCTGTCTTCTT
TCTCTGTTCGTTTAAAAAATGAGAACAAGGCACAAGGGGACTTGAGAGATTGCGTTTGTT
CTCCCAAAGACAAAGTGGTTATTTTATAAACGAAGAGGATGGAAAACCCTTTCCTTCTGC
AGTTTCTTAGCAACAGAACTGGAGTCCATTTCAATGTGCACGCACGGAACGCTCTCTGCA
TAGTGACATTAGAGCTTTCCATTTTCACAGGCGAAACACGCCGAGTAGCCTGGTAGCTAG
AAGACAGGGTTGGGGGAAGGAAACAGGAGGTCAAAAATGGGACCCTACTACCTTGAGAGG
AAGTAACTCATTTAAAACGTCTCCCTTCCTGGCATGCTTGTCTTAAATCGCAGGTTGCTC
TTAGGTAATGGCCTCGCTAGCCCCAGTTGGTTGCCACATGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATCCCAGGCCCTAATTTTAGTGTTTTGTTTTGTTTTGTTTTGTTTTTTAAAGAAAGCC
AACAGTACATCATGCCGTTCTTGGGGCTCCATGTGTCTGTCTGTCTGCACATGCTCGGTG
TGGGCGCCCGGGCCGTGGGCTGCAGGACAGAAGAGACCTGGGAAGTAGCCCCCCACTGAA
CACAAGCACCCCCAATTATTCTTCACTGCCCAGGATAATCTTTTAAAATCAAAGAGTAAT
TTTTATGGGACATTTTTCATTTTTGCTTGAAGTGAGGGCGCATTGGGGAGAATCTCCAGC
TTGAAAGATTAATAAATACTAGAGCAGTGGGTTATTGAAACCATGTTTTCCATCTCATTT
TCAAGGGCAAGTAAAAAAAAAAATGCAGATAGCATACACTCTCCACCACTCTGTCTTCTT
TCTCTGTTCGTTTAAAAAATGAGAACAAGGCACAAGGGGACTTGAGAGATTGCGTTTGTT
CTCCCAAAGACAAAGTGGTTATTTTATAAACGAAGAGGATGGAAAACCCTTTCCTTCTGC
AGTTTCTTAGCAACAGAACTGGAGTCCATTTCAATGTGCACGCACGGAACGCTCTCTGCA
TAGTGACATTAGAGCTTTCCATTTTCACAGGCGAAACACGCCGAGTAGCCTGGTAGCTAG
AAGACAGGGTTGGGGGAAGGAAACAGGAGGTCAAAAATGGGACCCTACTACCTTGAGAGG
AAGTAACTCATTTAAAACGTCTCCCTTCCTGGCATGCTTGTCTTAAATCGCAGGTTGCTC
TTAGGTAATGGCCTCGCTAGCCCCAGTTGGTTGCCACATGCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               38-134, + strand, RNAz p=0.924385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-134, + strand, RNAz p=0.924385

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-697, gnl|bosTau2|chr2 (28123874-28124570)
               

               
               1-697, gnl|Hg17|chr1 (8452998-8452322)
               

               
               1-697, gnl|Mm7|chr4 (149532854-149533598)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-697, gnl|bosTau2|chr2 (28123874-28124570)
               

               
               1-697, gnl|Hg17|chr1 (8452998-8452322)
               

               
               1-697, gnl|Mm7|chr4 (149532854-149533598)

	1-697, gnl\|bosTau2\|chr2 (28123874-28124570)
	1-697, gnl\|Hg17\|chr1 (8452998-8452322)
	1-697, gnl\|Mm7\|chr4 (149532854-149533598)