Non-Coding RNA Search

Lng1-LNG010036C05

Sequence:


               
               AGCCATCATGTTCTATCCCAAGAGACTGGATGTAGTTCACTCTGCTATAGAGTAGGACCT
CATTGCATATCCATTCTAAATGTGATCATTTGCACCTACTAACCCCAAACCCCCAGTCCA
TCCCACTTCTTCCTCCCTTCTGCTTGGTTGGCAACCACAAGTCTGTTCTCTCTCTGTGAG
TCACACAACTGAATTTCAGGCTTCCTCCCAGCAATGTGCACAGAGGGCTGAGAGGAGGAG
CTGGCCGAACCAGGAGCAGTTCCACTTTGCATTCTGATTTGGCTTTCTCCTGGAAATGGA
ATCTCTCTGAAGGGGCCTCCCCAGTTCTCGACATTGTGGCAGTAATGTTAGCTCCATCTC
TTCTCCTGGGGTCCGCCCCCCCACCCTCCCACTGGCTCTTGAGTCTGTCTCCATATTGAT
AAACACCCACCCTGCTAAAAGCTTGCCAGCTCCTCAGATGCCCCAGGGGCCATTTTATGG
GGTGGAGGTTAGTAAGGATCTGGGATTATTGCCATTATCCATGGCAAACTATCTCCTGGA
CCACCACCACCCCCTGTGCCAGGAAGAGCAAAGTCTGAAGCCAGCTAACACATTGTGAAA
TTCTCACCTGTCGCCCATTACCCTAAACCAAAACCCCACTGTCTTCCCTGAGAAATGAAT
TCCACATGGGAGAGAGAGAATGGTTTCCAAAGAATCCAGCCTGACCCATTTCAGGACCTT
TCTCAAAAACCTGCCACTGGGCCTAGCCTTCCGGGGCAACCCAGCTGGGCTTCCTCCCTC
GGCTGTTCCTAACTTCCAGGGATGACAGGGGGGTGTGATGGGCCCACAGTGACAGTCAGC
CCCACTGGGGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCATCATGTTCTATCCCAAGAGACTGGATGTAGTTCACTCTGCTATAGAGTAGGACCT
CATTGCATATCCATTCTAAATGTGATCATTTGCACCTACTAACCCCAAACCCCCAGTCCA
TCCCACTTCTTCCTCCCTTCTGCTTGGTTGGCAACCACAAGTCTGTTCTCTCTCTGTGAG
TCACACAACTGAATTTCAGGCTTCCTCCCAGCAATGTGCACAGAGGGCTGAGAGGAGGAG
CTGGCCGAACCAGGAGCAGTTCCACTTTGCATTCTGATTTGGCTTTCTCCTGGAAATGGA
ATCTCTCTGAAGGGGCCTCCCCAGTTCTCGACATTGTGGCAGTAATGTTAGCTCCATCTC
TTCTCCTGGGGTCCGCCCCCCCACCCTCCCACTGGCTCTTGAGTCTGTCTCCATATTGAT
AAACACCCACCCTGCTAAAAGCTTGCCAGCTCCTCAGATGCCCCAGGGGCCATTTTATGG
GGTGGAGGTTAGTAAGGATCTGGGATTATTGCCATTATCCATGGCAAACTATCTCCTGGA
CCACCACCACCCCCTGTGCCAGGAAGAGCAAAGTCTGAAGCCAGCTAACACATTGTGAAA
TTCTCACCTGTCGCCCATTACCCTAAACCAAAACCCCACTGTCTTCCCTGAGAAATGAAT
TCCACATGGGAGAGAGAGAATGGTTTCCAAAGAATCCAGCCTGACCCATTTCAGGACCTT
TCTCAAAAACCTGCCACTGGGCCTAGCCTTCCGGGGCAACCCAGCTGGGCTTCCTCCCTC
GGCTGTTCCTAACTTCCAGGGATGACAGGGGGGTGTGATGGGCCCACAGTGACAGTCAGC
CCCACTGGGGTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               688-798, - strand, RNAz p=0.975876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               688-798, - strand, RNAz p=0.975876

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-171, gnl|bosTau2|chr17 (24824380-24824218)
               


               
               182-853, gnl|bosTau2|chr29 (18440006-18439320)
               

               
               182-853, gnl|Hg17|chr11 (18360907-18361546)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-171, gnl|bosTau2|chr17 (24824380-24824218)
               


               
               182-853, gnl|bosTau2|chr29 (18440006-18439320)
               

               
               182-853, gnl|Hg17|chr11 (18360907-18361546)

	3-171, gnl\|bosTau2\|chr17 (24824380-24824218)

	182-853, gnl\|bosTau2\|chr29 (18440006-18439320)
	182-853, gnl\|Hg17\|chr11 (18360907-18361546)