Lng1-LNG010043A03
|
tttgtgccatattttagattccacctataagtgatatcatatggtatttatctttttctg
atttacttcatgtaatgtgagaatctctagttgaatccacattgttgcagatggcattct
ttctcttttttttatgactggacagtattccattgtatatatgtaccacatcttcttaat
ccatttatctgtcaatggacatttagtttgtttccatgtcttggctgttgtgaatagtgc
tgctctgaatattgctTTATCTTTAATATCTCTCTTCACCGGTTTTCCCCTCCTCAGACT
AATTTTTCCTTGAGAAAGTGCTCAGCACCAAAGGGAATAGAATGTCTGCTCAGCCGAGTG
TGATGTGTGGGATATTTGGAATTTCCCTCATTGATAAAGTAGCATTAATGGCACTAATTC
TGGAGTCCAGGCTTCCTGGGTGTAAAGCTGAGCATCTGAACTTAACTAGCTGGGTGATCT
TGAGCAATCTGTTGAAATAACCTCACGTAGCTTTGATTTCCAACTTAGTTTAAAAATAGA
TAAAGCACTTAATAATTTCTAGCACATGGAAAATATTGAGTGTTAGCTACTTTTATTAGT
GCATTGTTATTAAAGCAGCAGTAAGAGCCGTAAGACAGGGATGGTGCTGAAGTAGTGTGA
TGAATAATGGTGATAAGAACAAAAACACCTTCAGGTAACTTCTTAGAGTTATTTGATGAA
GGATGCAGTCAAGCTATGCTTGATCTGTGTTGAAACAGACATTGTGCCTTATTTAGATCT
ATTTGTTTGTTTGTTTTGTCTTTTTCCAGGGCCGCATCTGCGGCCTATGGAGATTCCCAA
GCTAGGGGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
tttgtgccatattttagattccacctataagtgatatcatatggtatttatctttttctg
atttacttcatgtaatgtgagaatctctagttgaatccacattgttgcagatggcattct
ttctcttttttttatgactggacagtattccattgtatatatgtaccacatcttcttaat
ccatttatctgtcaatggacatttagtttgtttccatgtcttggctgttgtgaatagtgc
tgctctgaatattgctTTATCTTTAATATCTCTCTTCACCGGTTTTCCCCTCCTCAGACT
AATTTTTCCTTGAGAAAGTGCTCAGCACCAAAGGGAATAGAATGTCTGCTCAGCCGAGTG
TGATGTGTGGGATATTTGGAATTTCCCTCATTGATAAAGTAGCATTAATGGCACTAATTC
TGGAGTCCAGGCTTCCTGGGTGTAAAGCTGAGCATCTGAACTTAACTAGCTGGGTGATCT
TGAGCAATCTGTTGAAATAACCTCACGTAGCTTTGATTTCCAACTTAGTTTAAAAATAGA
TAAAGCACTTAATAATTTCTAGCACATGGAAAATATTGAGTGTTAGCTACTTTTATTAGT
GCATTGTTATTAAAGCAGCAGTAAGAGCCGTAAGACAGGGATGGTGCTGAAGTAGTGTGA
TGAATAATGGTGATAAGAACAAAAACACCTTCAGGTAACTTCTTAGAGTTATTTGATGAA
GGATGCAGTCAAGCTATGCTTGATCTGTGTTGAAACAGACATTGTGCCTTATTTAGATCT
ATTTGTTTGTTTGTTTTGTCTTTTTCCAGGGCCGCATCTGCGGCCTATGGAGATTCCCAA
GCTAGGGGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
261-466, gnl|bosTau2|chr23 (29940062-29940272) |
|
261-466, gnl|Hg17|chr6 (18075343-18075106) |
|
261-466, gnl|Mm7|chr13 (46391644-46391456) |
| |
|
498-761, gnl|bosTau2|chr23 (29940269-29940525) |
|
498-761, gnl|canFam2|chr35 (19828978-19829249) |
|
498-761, gnl|dasNov1|scaffold_15344 (63598-63844) |
|
498-761, gnl|hg17|chr6 (18074733-18075011) |
|
498-761, gnl|Hg17|chr6 (18075109-18074835) |
|
498-761, gnl|loxAfr1|scaffold_73587 (9195-9451) |
|
498-761, gnl|mm7|chr13 (46391126-46391381) |
|
498-761, gnl|oryCun1|scaffold_201469 (5322-5546) |
|
498-761, gnl|panTro1|chr5 (18448133-18448395) |
|
498-761, gnl|rheMac2|chr4 (18018675-18018952) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
261-466, gnl|bosTau2|chr23 (29940062-29940272) |
|
261-466, gnl|Hg17|chr6 (18075343-18075106) |
|
261-466, gnl|Mm7|chr13 (46391644-46391456) |
| |
|
498-761, gnl|bosTau2|chr23 (29940269-29940525) |
|
498-761, gnl|canFam2|chr35 (19828978-19829249) |
|
498-761, gnl|dasNov1|scaffold_15344 (63598-63844) |
|
498-761, gnl|hg17|chr6 (18074733-18075011) |
|
498-761, gnl|Hg17|chr6 (18075109-18074835) |
|
498-761, gnl|loxAfr1|scaffold_73587 (9195-9451) |
|
498-761, gnl|mm7|chr13 (46391126-46391381) |
|
498-761, gnl|oryCun1|scaffold_201469 (5322-5546) |
|
498-761, gnl|panTro1|chr5 (18448133-18448395) |
|
498-761, gnl|rheMac2|chr4 (18018675-18018952) |
