Lng1-LNG010043H09
|
CTAAAAGTGCTTTTATGGAGGGAAGTGCGCACCACTAAACAAGACTCATGCCATCTGCCC
CCTAAATTTTGGGTTTTCAACAGAGAGAGCCTGTTCACAGCCAGGGACAGACAGCAAGCC
ATCACTCCAGTTCTGGCATCTGCAACTCTCTGTGCAAATGAGTCAGAAACAGAGGGTTGG
TATTTCCTTATGAAAGACAGATGCCTTTCAAATTCAGGGGGCAAATTCATGGCATAGCAA
AAGGGGTGAAATTTCCCCCAATCCCAGAACAAAAGGCCCCTGGGGAATCAGCAACTGCCC
TCAGGAGGCTCCAGAAGGGAGCAAGGCTGCTGTCCCAGCTAGAGCACTGAGGTCCAAATG
GCATTTACAGGGGTCTATGATTTATACCAATTTATATAAGATGGAAATCACTTTATGAAA
TCTGTTCCTACAATTACATTTCCCAAGAATTACTGTAGATTAGAATGTCACTATTCTTGG
ACACTCTGGCACATAGTTTGCTGTAAATAGTTTATTCAGAAATAAGGGAAAGGGAACGAT
CAGTTGCCAGTTTGTGTTAGCTTTTTCCATACAGAGCTCACTATGGTCAATTCCTTCTGA
TTTATGTACTGACTGCCTGTAGCCAGCTGGACAACAGTCATCCTGACTCCTTAGCACTTT
TTAAGCATTTTAAGAGTAAGCCCTAATAAAATGCTTCCTTTCTATCATCTTCATCCTTTG
GGATGACAAAAATTCCCCACAGAAACTGTTGTACACATTTCTCAAAATCCATAAATCCTA
ACGGCGACACTTTAACGTCCCAAAGTCAATGCATAAAAAATGTCTCTTCTTCTAAGTTAG
GGCCTTTCTGGGATGTCTTGACCTTTGAAGTCTCTCCAATAGATAGGTTTTCTTTCTTTA
TTCAGAATACTATAGGAGTTTCCATTGTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTAAAAGTGCTTTTATGGAGGGAAGTGCGCACCACTAAACAAGACTCATGCCATCTGCCC
CCTAAATTTTGGGTTTTCAACAGAGAGAGCCTGTTCACAGCCAGGGACAGACAGCAAGCC
ATCACTCCAGTTCTGGCATCTGCAACTCTCTGTGCAAATGAGTCAGAAACAGAGGGTTGG
TATTTCCTTATGAAAGACAGATGCCTTTCAAATTCAGGGGGCAAATTCATGGCATAGCAA
AAGGGGTGAAATTTCCCCCAATCCCAGAACAAAAGGCCCCTGGGGAATCAGCAACTGCCC
TCAGGAGGCTCCAGAAGGGAGCAAGGCTGCTGTCCCAGCTAGAGCACTGAGGTCCAAATG
GCATTTACAGGGGTCTATGATTTATACCAATTTATATAAGATGGAAATCACTTTATGAAA
TCTGTTCCTACAATTACATTTCCCAAGAATTACTGTAGATTAGAATGTCACTATTCTTGG
ACACTCTGGCACATAGTTTGCTGTAAATAGTTTATTCAGAAATAAGGGAAAGGGAACGAT
CAGTTGCCAGTTTGTGTTAGCTTTTTCCATACAGAGCTCACTATGGTCAATTCCTTCTGA
TTTATGTACTGACTGCCTGTAGCCAGCTGGACAACAGTCATCCTGACTCCTTAGCACTTT
TTAAGCATTTTAAGAGTAAGCCCTAATAAAATGCTTCCTTTCTATCATCTTCATCCTTTG
GGATGACAAAAATTCCCCACAGAAACTGTTGTACACATTTCTCAAAATCCATAAATCCTA
ACGGCGACACTTTAACGTCCCAAAGTCAATGCATAAAAAATGTCTCTTCTTCTAAGTTAG
GGCCTTTCTGGGATGTCTTGACCTTTGAAGTCTCTCCAATAGATAGGTTTTCTTTCTTTA
TTCAGAATACTATAGGAGTTTCCATTGTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-275, gnl|bosTau2|chr9 (26499728-26499990) |
|
1-275, gnl|Hg17|chr6 (106159372-106159095) |
| |
|
283-904, gnl|bosTau2|chr9 (26500035-26500646) |
|
283-904, gnl|canFam2|chr12 (66036822-66037300) |
|
283-904, gnl|dasNov1|scaffold_42877 (46951-46473) |
|
283-904, gnl|echTel1|scaffold_323916 (57931-57474) |
|
283-904, gnl|galGal2|chr3 (67004781-67004351) |
|
283-904, gnl|hg17|chr6 (106158402-106158878) |
|
283-904, gnl|Hg17|chr6 (106159048-106158433) |
|
283-904, gnl|loxAfr1|scaffold_7174 (29911-29439) |
|
283-904, gnl|mm7|chr10 (44684851-44684381) |
|
283-904, gnl|Mm7|chr10 (44684209-44684818) |
|
283-904, gnl|monDom2|scaffold_0 (115814471-115813993) |
|
283-904, gnl|oryCun1|scaffold_198568 (159484-159957) |
|
283-904, gnl|panTro1|chr5 (108304533-108305009) |
|
283-904, gnl|rheMac2|chr4 (101639352-101639828) |
|
283-904, gnl|rn3|chr20 (48871533-48871062) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-275, gnl|bosTau2|chr9 (26499728-26499990) |
|
1-275, gnl|Hg17|chr6 (106159372-106159095) |
| |
|
283-904, gnl|bosTau2|chr9 (26500035-26500646) |
|
283-904, gnl|canFam2|chr12 (66036822-66037300) |
|
283-904, gnl|dasNov1|scaffold_42877 (46951-46473) |
|
283-904, gnl|echTel1|scaffold_323916 (57931-57474) |
|
283-904, gnl|galGal2|chr3 (67004781-67004351) |
|
283-904, gnl|hg17|chr6 (106158402-106158878) |
|
283-904, gnl|Hg17|chr6 (106159048-106158433) |
|
283-904, gnl|loxAfr1|scaffold_7174 (29911-29439) |
|
283-904, gnl|mm7|chr10 (44684851-44684381) |
|
283-904, gnl|Mm7|chr10 (44684209-44684818) |
|
283-904, gnl|monDom2|scaffold_0 (115814471-115813993) |
|
283-904, gnl|oryCun1|scaffold_198568 (159484-159957) |
|
283-904, gnl|panTro1|chr5 (108304533-108305009) |
|
283-904, gnl|rheMac2|chr4 (101639352-101639828) |
|
283-904, gnl|rn3|chr20 (48871533-48871062) |
