Lng1-LNG010046D05
|
CACTTACGCAGTTCAGCCACCAGGCTATACCTTCCAGCTCTGCTGATTACCAGCTGGGAG
GCTTCTGTCTCACAAATACGTGGATGATGATATGGGCACCTCATAGGGGAGCTAGGAAGT
CAGATGATACCCACCAAGGGACCATGTAAGCCCCATCCTTTACTGGTCAAATGATCATGA
CAAAGAGACTGTCAGCCTCCCAAGTGTGAAGGACTAACCCAAGACTGAATGGAAAACGGA
AAGAATTGTAGTCTATAGCAGACTATGCAGAAGGAAGGACTAATTCTGTTATCAGCTCTT
GATTTTAACCAAAGAAACTTCCCTGCATTTCATCCATGAGATCCTCCTTAAGTGGGTGTG
GGAAAGGCAGGTATCCTCAGCCAGGCGCCCCCAGCCCCTTTCCCGTGGGGACATGCCCCC
AGTTCCAGGCCATTTGTCTGTCTTGTCCAGCGTCTGGCACCAGGCCTGGTCACCGCAGGG
GCTTGGGCCTGTGTGCTGAGCGAATGAGCAGTGCTTTCTGACAGGTGCCTGGAGTCTGCT
CAATCTGTCCACTTCTGAAGCCCCTGCAAGGGATCGGCTGGTCACTGTGGAGCCTTCTGT
GATGGTGAAAATAAAGGACTGGACCTCTCGAGAAATAATGCTCCTCATCTCCTGCATCAT
TCTGGGAATTCTCCTCCTTGTCTCATTCATTTTCATAGCCCTAATCCTCTTGAGAATAAA
AGGAAAATATGCCCTCCCCCCTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACTTACGCAGTTCAGCCACCAGGCTATACCTTCCAGCTCTGCTGATTACCAGCTGGGAG
GCTTCTGTCTCACAAATACGTGGATGATGATATGGGCACCTCATAGGGGAGCTAGGAAGT
CAGATGATACCCACCAAGGGACCATGTAAGCCCCATCCTTTACTGGTCAAATGATCATGA
CAAAGAGACTGTCAGCCTCCCAAGTGTGAAGGACTAACCCAAGACTGAATGGAAAACGGA
AAGAATTGTAGTCTATAGCAGACTATGCAGAAGGAAGGACTAATTCTGTTATCAGCTCTT
GATTTTAACCAAAGAAACTTCCCTGCATTTCATCCATGAGATCCTCCTTAAGTGGGTGTG
GGAAAGGCAGGTATCCTCAGCCAGGCGCCCCCAGCCCCTTTCCCGTGGGGACATGCCCCC
AGTTCCAGGCCATTTGTCTGTCTTGTCCAGCGTCTGGCACCAGGCCTGGTCACCGCAGGG
GCTTGGGCCTGTGTGCTGAGCGAATGAGCAGTGCTTTCTGACAGGTGCCTGGAGTCTGCT
CAATCTGTCCACTTCTGAAGCCCCTGCAAGGGATCGGCTGGTCACTGTGGAGCCTTCTGT
GATGGTGAAAATAAAGGACTGGACCTCTCGAGAAATAATGCTCCTCATCTCCTGCATCAT
TCTGGGAATTCTCCTCCTTGTCTCATTCATTTTCATAGCCCTAATCCTCTTGAGAATAAA
AGGAAAATATGCCCTCCCCCCTAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
597-726, + strand, RNAmicro p=0.977084 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
597-726, + strand, RNAmicro p=0.977084 |
|
10-363, gnl|bosTau2|chr29 (28229234-28228865) |
|
10-363, gnl|Hg17|chr11 (60534571-60534957) |
|
10-363, gnl|Mm7|chr19 (10477061-10476647) |
| |
|
402-590, gnl|bosTau2|chr29 (28228851-28228664) |
|
402-590, gnl|canFam2|chr18 (58334503-58334340) |
|
402-590, gnl|dasNov1|scaffold_58534 (1567-1712) |
|
402-590, gnl|echTel1|scaffold_210393 (4083-4223) |
|
402-590, gnl|hg17|chr11 (60534993-60535149) |
|
402-590, gnl|Hg17|chr11 (60534994-60535183) |
|
402-590, gnl|loxAfr1|scaffold_5676 (15258-15400) |
|
402-590, gnl|mm7|chr19 (10476627-10476484) |
|
402-590, gnl|Mm7|chr19 (10476624-10476451) |
|
402-590, gnl|oryCun1|scaffold_207583 (58455-58583) |
|
402-590, gnl|panTro1|chr9 (61469917-61470073) |
|
402-590, gnl|rheMac2|chr14 (13106589-13106433) |
|
402-590, gnl|rn3|chr1 (213456691-213456548) |
| |
|
594-729, gnl|bosTau2|chr29 (28226057-28225922) |
|
594-729, gnl|Hg17|chr11 (60537474-60537609) |
|
594-729, gnl|Mm7|chr19 (10474826-10474691) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
10-363, gnl|bosTau2|chr29 (28229234-28228865) |
|
10-363, gnl|Hg17|chr11 (60534571-60534957) |
|
10-363, gnl|Mm7|chr19 (10477061-10476647) |
| |
|
402-590, gnl|bosTau2|chr29 (28228851-28228664) |
|
402-590, gnl|canFam2|chr18 (58334503-58334340) |
|
402-590, gnl|dasNov1|scaffold_58534 (1567-1712) |
|
402-590, gnl|echTel1|scaffold_210393 (4083-4223) |
|
402-590, gnl|hg17|chr11 (60534993-60535149) |
|
402-590, gnl|Hg17|chr11 (60534994-60535183) |
|
402-590, gnl|loxAfr1|scaffold_5676 (15258-15400) |
|
402-590, gnl|mm7|chr19 (10476627-10476484) |
|
402-590, gnl|Mm7|chr19 (10476624-10476451) |
|
402-590, gnl|oryCun1|scaffold_207583 (58455-58583) |
|
402-590, gnl|panTro1|chr9 (61469917-61470073) |
|
402-590, gnl|rheMac2|chr14 (13106589-13106433) |
|
402-590, gnl|rn3|chr1 (213456691-213456548) |
| |
|
594-729, gnl|bosTau2|chr29 (28226057-28225922) |
|
594-729, gnl|Hg17|chr11 (60537474-60537609) |
|
594-729, gnl|Mm7|chr19 (10474826-10474691) |
