Non-Coding RNA Search

Lng1-LNG010047D04

Sequence:


               
               TTTTTTGTGGAACTTCCATACTGTTTTACTACTGGTGTAGTAGCTGCACCAATTTATACT
CTAATCATCAGTGTACAGGGGTTCCCTTTTCTTCACATCCTTAtttagactttctgatga
tagccattctgacaggtataaggtgatatctcactgtggttttgatttgcatttctctga
taattagcagtgttgaacatcttttcatgtgccttttagccacctgtatgtcttctttgg
gaaaatgtctgttcagGTTTTTTGTTTGGGTTTTTTTGATACTGAGTTGTATGAGCTGTT
TGTTTATTTTTTGATGTTAACTCTTTTTTTTcttttcagggcctcacatgctgtatatgg
aggctcccaggctagggttcgaactggagctgtagctgctggcctacatcctagccacag
caacgcagaatccaagccatgtctgtgacctacatcacagctcatggcaatgccagatgc
cagatccttaacccactgagcaaggcctgggatcaaacccacatcctcatggatattagt
cgggttcgttaaccactgagccacgatgggtactccaatattcactctttttttgtcata
tcatttgcaaatatcttctcctattcagtagattgtctcctcattttgtcaaaggtttcc
tttgctgtgaaaaacttttaagtttagttaggtctcatttgtttatttttgcttttattt
cttttgccttaggagacagatcCCCCCAAATATTGCAGTGATTTACAACAAAGAGTTTTC
TACCTATGTTCTCTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGTGGAACTTCCATACTGTTTTACTACTGGTGTAGTAGCTGCACCAATTTATACT
CTAATCATCAGTGTACAGGGGTTCCCTTTTCTTCACATCCTTAtttagactttctgatga
tagccattctgacaggtataaggtgatatctcactgtggttttgatttgcatttctctga
taattagcagtgttgaacatcttttcatgtgccttttagccacctgtatgtcttctttgg
gaaaatgtctgttcagGTTTTTTGTTTGGGTTTTTTTGATACTGAGTTGTATGAGCTGTT
TGTTTATTTTTTGATGTTAACTCTTTTTTTTcttttcagggcctcacatgctgtatatgg
aggctcccaggctagggttcgaactggagctgtagctgctggcctacatcctagccacag
caacgcagaatccaagccatgtctgtgacctacatcacagctcatggcaatgccagatgc
cagatccttaacccactgagcaaggcctgggatcaaacccacatcctcatggatattagt
cgggttcgttaaccactgagccacgatgggtactccaatattcactctttttttgtcata
tcatttgcaaatatcttctcctattcagtagattgtctcctcattttgtcaaaggtttcc
tttgctgtgaaaaacttttaagtttagttaggtctcatttgtttatttttgcttttattt
cttttgccttaggagacagatcCCCCCAAATATTGCAGTGATTTACAACAAAGAGTTTTC
TACCTATGTTCTCTTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|34531481|dbj|BAC86155.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34531481|dbj|BAC86155.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-98, - strand, RNAz p=0.816323

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-98, - strand, RNAz p=0.816323

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-264, gnl|bosTau2|chr10 (18389617-18389877)
               

               
               1-264, gnl|canFam2|chr30 (7289257-7289726)
               

               
               1-264, gnl|hg17|chr15 (34845671-34846148)
               

               
               1-264, gnl|Hg17|chr15 (34845956-34846240)
               

               
               1-264, gnl|panTro1|chr16 (34650200-34650676)
               

               
               1-264, gnl|rheMac2|chr7 (15089902-15090363)
               


               
               578-797, gnl|bosTau2|chr10 (22978650-22978870)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr10 (18389617-18389877)
               

               
               1-264, gnl|canFam2|chr30 (7289257-7289726)
               

               
               1-264, gnl|hg17|chr15 (34845671-34846148)
               

               
               1-264, gnl|Hg17|chr15 (34845956-34846240)
               

               
               1-264, gnl|panTro1|chr16 (34650200-34650676)
               

               
               1-264, gnl|rheMac2|chr7 (15089902-15090363)
               


               
               578-797, gnl|bosTau2|chr10 (22978650-22978870)

	1-264, gnl\|bosTau2\|chr10 (18389617-18389877)
	1-264, gnl\|canFam2\|chr30 (7289257-7289726)
	1-264, gnl\|hg17\|chr15 (34845671-34846148)
	1-264, gnl\|Hg17\|chr15 (34845956-34846240)
	1-264, gnl\|panTro1\|chr16 (34650200-34650676)
	1-264, gnl\|rheMac2\|chr7 (15089902-15090363)

	578-797, gnl\|bosTau2\|chr10 (22978650-22978870)