Non-Coding RNA Search

Lng1-LNG010057B02

Sequence:


               
               CTTTTGAGTATTTATGGTCTTGCAGTAGGAGCACTTTGATTCTCATAACAGAAATAGGGT
CACATTTAGAAAATGTACCCTACGCCAAGCTGGAAAATGAGATCCCCCAGAGGGTGGCTG
ATGGATGGGGCTGCACGGCAAAGTGTGGCCTGCCAGCCAGGCCATGTGATGCCCTTTCTG
TAAACCCCAATTGGAAGCTGTCTTTGTGTCTCAGGCCTCAGTCTGCCAGCCCTCGGCTTT
CTGCTTGGCAATGACGAGGGGCTGGGGAAAAAGACATGTAGCTAAATACCAAACCATCTT
CCACATGGTTGCCCTTAACAGCCTAGAGGTTGGCCAAGACGGAGCTAGGCTTTGGCAGGA
AGTCCTCCACGGCCCTAAACTGGTTCTTTGTGTCTAGGTAGAGAGTTTGGGATGTTGCAG
TTGAAGGAGCGTGAGTTAAGTGTGACACCAACGTACTACCCTGGCCATAGGCAAGGCACG
GTCTCCTGCTTTGGACCTGTTTTCTCTGCTCATTGGGAGGATTTGGTCTTGGTGAGCTCT
GAGGACTATTCTTCCAGCCCATGGAGTTTCTTGATTCCCATGAGGTGGCTGCCGAATTAA
TAATGCTGCAAAGAACAGGACTTTTGGGCAATAGCAGTTGAGGGCTTTCAGAGGAGGGAG
GAAATTACATCTAAGTTGCAAATTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGAGTATTTATGGTCTTGCAGTAGGAGCACTTTGATTCTCATAACAGAAATAGGGT
CACATTTAGAAAATGTACCCTACGCCAAGCTGGAAAATGAGATCCCCCAGAGGGTGGCTG
ATGGATGGGGCTGCACGGCAAAGTGTGGCCTGCCAGCCAGGCCATGTGATGCCCTTTCTG
TAAACCCCAATTGGAAGCTGTCTTTGTGTCTCAGGCCTCAGTCTGCCAGCCCTCGGCTTT
CTGCTTGGCAATGACGAGGGGCTGGGGAAAAAGACATGTAGCTAAATACCAAACCATCTT
CCACATGGTTGCCCTTAACAGCCTAGAGGTTGGCCAAGACGGAGCTAGGCTTTGGCAGGA
AGTCCTCCACGGCCCTAAACTGGTTCTTTGTGTCTAGGTAGAGAGTTTGGGATGTTGCAG
TTGAAGGAGCGTGAGTTAAGTGTGACACCAACGTACTACCCTGGCCATAGGCAAGGCACG
GTCTCCTGCTTTGGACCTGTTTTCTCTGCTCATTGGGAGGATTTGGTCTTGGTGAGCTCT
GAGGACTATTCTTCCAGCCCATGGAGTTTCTTGATTCCCATGAGGTGGCTGCCGAATTAA
TAATGCTGCAAAGAACAGGACTTTTGGGCAATAGCAGTTGAGGGCTTTCAGAGGAGGGAG
GAAATTACATCTAAGTTGCAAATTAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               40-148, - strand, RNAz p=0.733365
               

               
               189-305, - strand, RNAz p=0.924721
               

               
               455-569, + strand, RNAz p=0.620909

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-148, - strand, RNAz p=0.733365
               

               
               189-305, - strand, RNAz p=0.924721
               

               
               455-569, + strand, RNAz p=0.620909

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               202-298, + strand, RNAmicro p=0.999858

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               202-298, + strand, RNAmicro p=0.999858

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-698, gnl|bosTau2|chr7 (44149466-44150156)
               

               
               1-698, gnl|Hg17|chr5 (153596448-153597138)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-698, gnl|bosTau2|chr7 (44149466-44150156)
               

               
               1-698, gnl|Hg17|chr5 (153596448-153597138)

	40-148, - strand, RNAz p=0.733365
	189-305, - strand, RNAz p=0.924721
	455-569, + strand, RNAz p=0.620909

	1-698, gnl\|bosTau2\|chr7 (44149466-44150156)
	1-698, gnl\|Hg17\|chr5 (153596448-153597138)