Non-Coding RNA Search

Lng1-LNG010060C05

Sequence:


               
               ATCTGATAGTTGTTCTTCACAGCTGTTTGTCAGGGGGTAGTTTTTTTTTATTATTATTTT
ACTGTCCCCTGTGAGTTTATTCCATTCTTAACAAATTGACCTACAGTGAACAAAGAGAGC
CAGATTTGAGGCCATGGCCCTAAAACCCTTGTTGGTATGCAAGAAAGAATTAGTGGCAAC
ATATACCAATTCTGACTTTCTTAATAAAGTATCCTCTAAAAATATTACCTTAGAGAAAAC
TACAACAAACCAAGATTTGTAAAGCTGGTACTGTAAACCTACAAGTCCTTAAACTTAATG
GAGAAGAAGATTAGCTTAGAATTTGGCCATTTGATTCTGCTCATTTAACTGTGAAAGCAG
ACATAAATGAGAACATTGTGTGAAGAAGATCACTTGGGACAATCTAAATAAAATAATCTG
TTTTGTGCTATAGCTTGTTTCTATTACGGGAGCATGGCTTTTATTAGTACTATTTTTAGT
CCTCCTAAAATGATAAAATATTTCAggagctcctgttgtggctcagcaggttaagaaccc
agctagtatccatgaggatgctggttgatccctgggctcgctcagtggattaaaggatcc
catgttgctgtggctatggtgtgggccagtggctacagctccaatttgacgtctagcctg
ggagcctccatatgccgtgggtgcagccctAAAAAGACCAAAAAAAGAGAGAGAGAAAAT
ACTTCACAGATCTCTAGGCCTTTTTCAATTTGTATAGAAATTTTAACACTTGGGAGGATG
CTCATGTTCCCACGATCATTTTCGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGATAGTTGTTCTTCACAGCTGTTTGTCAGGGGGTAGTTTTTTTTTATTATTATTTT
ACTGTCCCCTGTGAGTTTATTCCATTCTTAACAAATTGACCTACAGTGAACAAAGAGAGC
CAGATTTGAGGCCATGGCCCTAAAACCCTTGTTGGTATGCAAGAAAGAATTAGTGGCAAC
ATATACCAATTCTGACTTTCTTAATAAAGTATCCTCTAAAAATATTACCTTAGAGAAAAC
TACAACAAACCAAGATTTGTAAAGCTGGTACTGTAAACCTACAAGTCCTTAAACTTAATG
GAGAAGAAGATTAGCTTAGAATTTGGCCATTTGATTCTGCTCATTTAACTGTGAAAGCAG
ACATAAATGAGAACATTGTGTGAAGAAGATCACTTGGGACAATCTAAATAAAATAATCTG
TTTTGTGCTATAGCTTGTTTCTATTACGGGAGCATGGCTTTTATTAGTACTATTTTTAGT
CCTCCTAAAATGATAAAATATTTCAggagctcctgttgtggctcagcaggttaagaaccc
agctagtatccatgaggatgctggttgatccctgggctcgctcagtggattaaaggatcc
catgttgctgtggctatggtgtgggccagtggctacagctccaatttgacgtctagcctg
ggagcctccatatgccgtgggtgcagccctAAAAAGACCAAAAAAAGAGAGAGAGAAAAT
ACTTCACAGATCTCTAGGCCTTTTTCAATTTGTATAGAAATTTTAACACTTGGGAGGATG
CTCATGTTCCCACGATCATTTTCGTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               158-277, - strand, RNAz p=0.646577

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               158-277, - strand, RNAz p=0.646577

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-505, gnl|bosTau2|chr6 (48427923-48428392)
               

               
               1-505, gnl|Hg17|chr4 (71991384-71991872)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr6 (48427923-48428392)
               

               
               1-505, gnl|Hg17|chr4 (71991384-71991872)

	1-505, gnl\|bosTau2\|chr6 (48427923-48428392)
	1-505, gnl\|Hg17\|chr4 (71991384-71991872)