Lng1-LNG010062F12
|
AGTAATCGAAAAGGATCTACCATATCCAACCTCACAGTTCTGCCAGCATCTCATCGCACA
AATCCCTATTTCACCCCCGTGCCAGTCTTAGAAGTGGATGCCAGTAAAGGGATTTTAAGT
ATGATAGAACGAGGACTGATCCCACCAACAGCCAGAATAACCTTTCAGAATCCACCCATT
ATACCCAGAGCGGCTCCTCTGCATAGTTTCGATGAAGCCCGGAAGATTACAACTACTGCC
CCTTTTGCTGCACCCCAGAGACCACAGTTGATCACAAAGGAAGTGAAGAATCTCACTCTC
GAGAGACAAAGATCAAAGGGGAAAGGCAGAAGGGCAAGAGGATGTCATGATAGAAAGGTC
TGTAATTTGCGTGACTAGTTGAAATTTGGGGGTTGTCACCTGATATCCCTTCCTTATGCT
GCAGGGCAAAAGTATGGGAGATGGGTTTGACAGCTGGAGATGACAATAAAAGTTCTGCTC
TTCTTTTATAAAAGAAATTAAATCGTGTTTTCAGAAAACAAAACAAAACATAGTTCATTT
AAAGTGAAAAATCCCCCCCCCCCGTTGGGATTGATTTATTTCTTAGGCTGCAATCCAAAA
AAGTGATTTAGCATAGTCAAATTTGGCTGAATCACATTAGTCTTCAACCTATAGCTAAGC
TTTTCATCTTTTAAAAGTACACTTAAAAAGAATAAAACATGAAAAAAACCCTCAATTGTC
CTTCAGCATATGATTATATGTATGTGTAAACACACATGCACATGTGCACACTGCATCTAT
GATGTAATANGCAAGGGTAAGGGACTCAGAATTAAGTTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTAATCGAAAAGGATCTACCATATCCAACCTCACAGTTCTGCCAGCATCTCATCGCACA
AATCCCTATTTCACCCCCGTGCCAGTCTTAGAAGTGGATGCCAGTAAAGGGATTTTAAGT
ATGATAGAACGAGGACTGATCCCACCAACAGCCAGAATAACCTTTCAGAATCCACCCATT
ATACCCAGAGCGGCTCCTCTGCATAGTTTCGATGAAGCCCGGAAGATTACAACTACTGCC
CCTTTTGCTGCACCCCAGAGACCACAGTTGATCACAAAGGAAGTGAAGAATCTCACTCTC
GAGAGACAAAGATCAAAGGGGAAAGGCAGAAGGGCAAGAGGATGTCATGATAGAAAGGTC
TGTAATTTGCGTGACTAGTTGAAATTTGGGGGTTGTCACCTGATATCCCTTCCTTATGCT
GCAGGGCAAAAGTATGGGAGATGGGTTTGACAGCTGGAGATGACAATAAAAGTTCTGCTC
TTCTTTTATAAAAGAAATTAAATCGTGTTTTCAGAAAACAAAACAAAACATAGTTCATTT
AAAGTGAAAAATCCCCCCCCCCCGTTGGGATTGATTTATTTCTTAGGCTGCAATCCAAAA
AAGTGATTTAGCATAGTCAAATTTGGCTGAATCACATTAGTCTTCAACCTATAGCTAAGC
TTTTCATCTTTTAAAAGTACACTTAAAAAGAATAAAACATGAAAAAAACCCTCAATTGTC
CTTCAGCATATGATTATATGTATGTGTAAACACACATGCACATGTGCACACTGCATCTAT
GATGTAATANGCAAGGGTAAGGGACTCAGAATTAAGTTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
108-228, gnl|bosTau2|chr10 (6143776-6143656) |
|
108-228, gnl|canFam2|chr30 (34485149-34485282) |
|
108-228, gnl|dasNov1|scaffold_1359 (106942-106809) |
|
108-228, gnl|echTel1|scaffold_319037 (115934-115798) |
|
108-228, gnl|galGal2|chr10 (19571715-19571835) |
|
108-228, gnl|hg17|chr15 (65423425-65423558) |
|
108-228, gnl|Hg17|chr15 (65423453-65423573) |
|
108-228, gnl|loxAfr1|scaffold_4454 (63171-63304) |
|
108-228, gnl|mm7|chr9 (63573465-63573326) |
|
108-228, gnl|Mm7|chr9 (63573429-63573309) |
|
108-228, gnl|monDom2|scaffold_12 (44920503-44920374) |
|
108-228, gnl|panTro1|chr16 (65929584-65929717) |
|
108-228, gnl|rheMac2|chr7 (45923866-45923999) |
|
108-228, gnl|rn3|chr8 (67729126-67728987) |
| |
|
317-820, gnl|bosTau2|chr10 (6130526-6130011) |
|
317-820, gnl|Hg17|chr15 (65439237-65439745) |
|
317-820, gnl|Mm7|chr9 (63562740-63562229) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
108-228, gnl|bosTau2|chr10 (6143776-6143656) |
|
108-228, gnl|canFam2|chr30 (34485149-34485282) |
|
108-228, gnl|dasNov1|scaffold_1359 (106942-106809) |
|
108-228, gnl|echTel1|scaffold_319037 (115934-115798) |
|
108-228, gnl|galGal2|chr10 (19571715-19571835) |
|
108-228, gnl|hg17|chr15 (65423425-65423558) |
|
108-228, gnl|Hg17|chr15 (65423453-65423573) |
|
108-228, gnl|loxAfr1|scaffold_4454 (63171-63304) |
|
108-228, gnl|mm7|chr9 (63573465-63573326) |
|
108-228, gnl|Mm7|chr9 (63573429-63573309) |
|
108-228, gnl|monDom2|scaffold_12 (44920503-44920374) |
|
108-228, gnl|panTro1|chr16 (65929584-65929717) |
|
108-228, gnl|rheMac2|chr7 (45923866-45923999) |
|
108-228, gnl|rn3|chr8 (67729126-67728987) |
| |
|
317-820, gnl|bosTau2|chr10 (6130526-6130011) |
|
317-820, gnl|Hg17|chr15 (65439237-65439745) |
|
317-820, gnl|Mm7|chr9 (63562740-63562229) |
