Non-Coding RNA Search

Lng1-LNG010063E10

Sequence:


               
               CATCCCCCAAAGTTAGTGCTGAAGAGCACTGAATGTGGGCCCCCAAAGGGGAAAAATAGG
CCTTCTTCTCTCAACTTGGACTCTGCCGTTCCTATCACTGACCTATTCCGGTTTGAGAAT
GTGGCCTCCTTTGGTTCACCTGAAATGCAGTTCTCTGAGCCAGGAGACCCAGAGGTCACG
TGGATGACCCCATCGCACTGTAAAGTAGACCCCTGGAGGGTATATTCCCAAGAGTCTCAG
GACCTGGACATTGTCACTCATGCCCTGACAGGCCGCCGTAACTCAGCTCCTGTGAGTGTG
TCAGCTGTGAGAACCTCCTTCATGGTCAAAATGTGCCAGGCCAGGGCCGTCCCGGTCATC
CCACCCAAAATTCAGTACACCCAGATCCCACAGCCCCTGCCCTCCCAGAGCTCAGAGGAG
AATGGAGCTCAGCCTCTTGAGAGGAGCCAAGAGGAACCCGGTTCAACTGGTGGGACCTCT
CAGAAACGTGCCAAAGATGATTCTCTCTCCTCCTTGGAAAGCCCCCAGGAAGAGAAACCA
AAGCAAGATATAGGACCCCTCGAGTCCTCACCTCTGGACTCCACCGCACCTCACATGTGC
GAGGGACCCACTCTTTCTCCAGAACCAGATTTGCCCAACCTGCTCTCCTCCCAGGATGCA
GTCGTGCAATGTCGAAAGCGCACATCAGAGACAGAGCCATCCGGAGACAACCTTCTTTCT
TCAAAAATCGAGCGCCCGTCAGGNAGTTCTAAGCCTTTCCACAGGTCAAGACCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCCCCAAAGTTAGTGCTGAAGAGCACTGAATGTGGGCCCCCAAAGGGGAAAAATAGG
CCTTCTTCTCTCAACTTGGACTCTGCCGTTCCTATCACTGACCTATTCCGGTTTGAGAAT
GTGGCCTCCTTTGGTTCACCTGAAATGCAGTTCTCTGAGCCAGGAGACCCAGAGGTCACG
TGGATGACCCCATCGCACTGTAAAGTAGACCCCTGGAGGGTATATTCCCAAGAGTCTCAG
GACCTGGACATTGTCACTCATGCCCTGACAGGCCGCCGTAACTCAGCTCCTGTGAGTGTG
TCAGCTGTGAGAACCTCCTTCATGGTCAAAATGTGCCAGGCCAGGGCCGTCCCGGTCATC
CCACCCAAAATTCAGTACACCCAGATCCCACAGCCCCTGCCCTCCCAGAGCTCAGAGGAG
AATGGAGCTCAGCCTCTTGAGAGGAGCCAAGAGGAACCCGGTTCAACTGGTGGGACCTCT
CAGAAACGTGCCAAAGATGATTCTCTCTCCTCCTTGGAAAGCCCCCAGGAAGAGAAACCA
AAGCAAGATATAGGACCCCTCGAGTCCTCACCTCTGGACTCCACCGCACCTCACATGTGC
GAGGGACCCACTCTTTCTCCAGAACCAGATTTGCCCAACCTGCTCTCCTCCCAGGATGCA
GTCGTGCAATGTCGAAAGCGCACATCAGAGACAGAGCCATCCGGAGACAACCTTCTTTCT
TCAAAAATCGAGCGCCCGTCAGGNAGTTCTAAGCCTTTCCACAGGTCAAGACCAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-319, - strand, RNAz p=0.722125
               

               
               360-679, - strand, RNAz p=0.959093

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, - strand, RNAz p=0.722125
               

               
               360-679, - strand, RNAz p=0.959093

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-776, gnl|bosTau2|chr1 (41147111-41147886)
               

               
               1-776, gnl|Hg17|chr3 (120616716-120617491)
               

               
               1-776, gnl|Mm7|chr16 (38313449-38312680)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-776, gnl|bosTau2|chr1 (41147111-41147886)
               

               
               1-776, gnl|Hg17|chr3 (120616716-120617491)
               

               
               1-776, gnl|Mm7|chr16 (38313449-38312680)

	120-319, - strand, RNAz p=0.722125
	360-679, - strand, RNAz p=0.959093

	1-776, gnl\|bosTau2\|chr1 (41147111-41147886)
	1-776, gnl\|Hg17\|chr3 (120616716-120617491)
	1-776, gnl\|Mm7\|chr16 (38313449-38312680)