Non-Coding RNA Search

Lng1-LNG010063F11

Sequence:


               
               GTTGGAGTTTCCCACTTCCTTAAACAGAAAAGGAATTTCTGACAGAAACCCTGGAAGAGC
TTCTAAGAGGGAAAATGGCTGGGGTGGGTAAATTCTCAAGTAACTCGAAACACTCCCAAA
TTTTTAGTGTTAGAGCAGGTGGAAAAATGTGCTCCAGGGAGTGATGTGTTGTGCAATCGT
TGGCCTTGGTGAGGATTTCACCACCTTCTGTGATCTTCCTGTTTTCCCATGACCAGTTTT
ATAAAAATTCAGGTTTTTCACTTGCCAGACCTTGACCCCAGGGTCCACACCGGAGCCTGA
GAGCTGTTGCAGAGCTGAGTATTGGGTGTAGTTTGGAATCACTCAGGGCATTTCTACAGA
CCAAGCCATCCTGGGTCCCGTTTCCTGTCAACAGGAAAGCCTGGGTCTCAGCCTGCAGCA
GGAGCTCTGGGAGGCTTGCCTAGGCCTGGAGGTCCCTGGCAGTTTGGGGAGTTTGTGCAT
GTAAGGTGTTCCAGCAGGTTGAGTGAGAAGTGATGCAAGAGAAATCTGACAAGGTTTTTC
CGCTCCTTGGTTTAAAACACACGTAGGTATGggagttgctgtcacggctcagtggtttac
aaacatgactagtatccatgaggacacaggttcaatccctggccttgctcattgngttaa
ggatctggcgttgttgtgagctgtggtgtagattgcaggtgtggcttggatcccgagttg
ctgtgactgtggtg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGAGTTTCCCACTTCCTTAAACAGAAAAGGAATTTCTGACAGAAACCCTGGAAGAGC
TTCTAAGAGGGAAAATGGCTGGGGTGGGTAAATTCTCAAGTAACTCGAAACACTCCCAAA
TTTTTAGTGTTAGAGCAGGTGGAAAAATGTGCTCCAGGGAGTGATGTGTTGTGCAATCGT
TGGCCTTGGTGAGGATTTCACCACCTTCTGTGATCTTCCTGTTTTCCCATGACCAGTTTT
ATAAAAATTCAGGTTTTTCACTTGCCAGACCTTGACCCCAGGGTCCACACCGGAGCCTGA
GAGCTGTTGCAGAGCTGAGTATTGGGTGTAGTTTGGAATCACTCAGGGCATTTCTACAGA
CCAAGCCATCCTGGGTCCCGTTTCCTGTCAACAGGAAAGCCTGGGTCTCAGCCTGCAGCA
GGAGCTCTGGGAGGCTTGCCTAGGCCTGGAGGTCCCTGGCAGTTTGGGGAGTTTGTGCAT
GTAAGGTGTTCCAGCAGGTTGAGTGAGAAGTGATGCAAGAGAAATCTGACAAGGTTTTTC
CGCTCCTTGGTTTAAAACACACGTAGGTATGggagttgctgtcacggctcagtggtttac
aaacatgactagtatccatgaggacacaggttcaatccctggccttgctcattgngttaa
ggatctggcgttgttgtgagctgtggtgtagattgcaggtgtggcttggatcccgagttg
ctgtgactgtggtg

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-120, - strand, RNAz p=0.952824
               

               
               397-513, + strand, RNAz p=0.960813

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.952824
               

               
               397-513, + strand, RNAz p=0.960813

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-559, gnl|bosTau2|chr4 (5158992-5159535)
               

               
               2-559, gnl|Hg17|chr1 (65233873-65233333)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-559, gnl|bosTau2|chr4 (5158992-5159535)
               

               
               2-559, gnl|Hg17|chr1 (65233873-65233333)

	2-120, - strand, RNAz p=0.952824
	397-513, + strand, RNAz p=0.960813

	2-559, gnl\|bosTau2\|chr4 (5158992-5159535)
	2-559, gnl\|Hg17\|chr1 (65233873-65233333)