Non-Coding RNA Search

Lng1-LNG010066A01

Sequence:


               
               CTTGTAAAGGTAGAATGGGAAGCAGAAGAATAACATGGAATAAAAGGCATCCAGAACTTT
GCAGCTCAGACAGTAGAGCCTGGCTTGAGAAAGAAGGAAGTTGTGTGACGCAGGGCCTGC
TGAGATGCCATCCGGAAGCATTGTTTACTCTCCTGCAAGCACCAAGAAAAGCAATCCAGA
AATGCCAAGTGAATATTTTGCCTCTTACATGCACCTCTTATTTCCCTGGTGTTTCTAGGC
TGTGTTAGCCTTTATGCTTAAGTGATGCATGTTATATTGTCCAGGATTTCATGCCCACTA
GGTGACATTACACTATTACCACTTTTAATGCTGCAGTAGTTTTCATAACCTATAGTACGT
ATATGGATCCTTATTATAACTTCTATTTGGGCCTTTTTTTTTTTTTAATAAGAAGGCATT
TTTTTCTTTTGGCAGCTACATTGTTGGGGGCTTTGAGAATTTCCTTAATGCTGTCACTCA
AGGGGTATACGTTCTGAATTGTCATTTTCTGCTTTTGTGCAGTTTCTCTTGTTCCTATGA
GCTTCGTTAGTGGCTCATGCACAATATGACTCTTTGGAAGTCTAGATTGCTGGCAGCCCC
AGCGATGCCCAGAGTCTTGTTAGGAGGGCATTTCTTCCTGCCCTCGGCGTGACAGATTGG
AGATGCTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGTAAAGGTAGAATGGGAAGCAGAAGAATAACATGGAATAAAAGGCATCCAGAACTTT
GCAGCTCAGACAGTAGAGCCTGGCTTGAGAAAGAAGGAAGTTGTGTGACGCAGGGCCTGC
TGAGATGCCATCCGGAAGCATTGTTTACTCTCCTGCAAGCACCAAGAAAAGCAATCCAGA
AATGCCAAGTGAATATTTTGCCTCTTACATGCACCTCTTATTTCCCTGGTGTTTCTAGGC
TGTGTTAGCCTTTATGCTTAAGTGATGCATGTTATATTGTCCAGGATTTCATGCCCACTA
GGTGACATTACACTATTACCACTTTTAATGCTGCAGTAGTTTTCATAACCTATAGTACGT
ATATGGATCCTTATTATAACTTCTATTTGGGCCTTTTTTTTTTTTTAATAAGAAGGCATT
TTTTTCTTTTGGCAGCTACATTGTTGGGGGCTTTGAGAATTTCCTTAATGCTGTCACTCA
AGGGGTATACGTTCTGAATTGTCATTTTCTGCTTTTGTGCAGTTTCTCTTGTTCCTATGA
GCTTCGTTAGTGGCTCATGCACAATATGACTCTTTGGAAGTCTAGATTGCTGGCAGCCCC
AGCGATGCCCAGAGTCTTGTTAGGAGGGCATTTCTTCCTGCCCTCGGCGTGACAGATTGG
AGATGCTGGTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.754025
               

               
               280-466, - strand, RNAz p=0.957305
               

               
               507-625, + strand, RNAz p=0.82406

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.754025
               

               
               280-466, - strand, RNAz p=0.957305
               

               
               507-625, + strand, RNAz p=0.82406

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               507-595, + strand, RNAmicro p=0.994314

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               507-595, + strand, RNAmicro p=0.994314

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-670, gnl|bosTau2|chr10 (35676804-35677471)
               

               
               3-670, gnl|Hg17|chr15 (59201743-59201072)
               

               
               3-670, gnl|Mm7|chr9 (68795866-68796531)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-670, gnl|bosTau2|chr10 (35676804-35677471)
               

               
               3-670, gnl|Hg17|chr15 (59201743-59201072)
               

               
               3-670, gnl|Mm7|chr9 (68795866-68796531)

	120-239, - strand, RNAz p=0.754025
	280-466, - strand, RNAz p=0.957305
	507-625, + strand, RNAz p=0.82406

	3-670, gnl\|bosTau2\|chr10 (35676804-35677471)
	3-670, gnl\|Hg17\|chr15 (59201743-59201072)
	3-670, gnl\|Mm7\|chr9 (68795866-68796531)