Non-Coding RNA Search

Lng1-LNG010067D10

Sequence:


               
               TCACACACGTATTAAAAGTGCCTTTCAACTCCCAAACGGGTTGGATTGGCTTTTGTAATA
GTAATTTGGCTTCAAGGGGAAACCCGGGAGGCCCCCAGAAGGGAAGTGACAGCCCCAGGA
CTTGCAGCCTGAAACCAACCCCCCAGGGTAGATGGAAAAGGACTGAGGGAGGGGCCACTT
GGGTCCAGAGTGAGGGCGGAACCCAGGGACTTTGCTCTAACGACCCTGCCTGGGATATAA
GTCCTCTTCCTTCCTTAAACCACCCTGCCATCAGCCTTGGGACAAGAAGGGCCAAGCAGA
AACACAATTTGCAGGTCCCAGGATAGTTATTGGGTACTGGAGATAACTGAAGTTCAGGCC
TTCATCCTAAGCAGTCTTACTTGCCATCCCCCCAATGTCCACCCATTCAACCAGAGCAGG
GGTGACTCAGTGTCCCCCCTGTACCACCCAGCCTCAGATTTCTGGCACCCTTCTCTGCCG
CAGATAACCTGACTCAGAAGGGGCAGGGAATTCATATATAAGATTAGCATTGAATCTAAT
CCTTATCAGGCCCCAGGAAAAAACAAGGGTTATATAATTTCCATCTTACATTTGAGGAAA
CTGAGGCCAAGGGAGGGACAGTGAGCAAGGATGTCAAATCCAGCTTCACCTGGCTCTAGA
CCCTGCCGGAGGGGCTGAAGGTGGGTCCTTCAGGAAATGCCAGGATTGCATACCCCAACC
CTATGCCCAGTCCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACACACGTATTAAAAGTGCCTTTCAACTCCCAAACGGGTTGGATTGGCTTTTGTAATA
GTAATTTGGCTTCAAGGGGAAACCCGGGAGGCCCCCAGAAGGGAAGTGACAGCCCCAGGA
CTTGCAGCCTGAAACCAACCCCCCAGGGTAGATGGAAAAGGACTGAGGGAGGGGCCACTT
GGGTCCAGAGTGAGGGCGGAACCCAGGGACTTTGCTCTAACGACCCTGCCTGGGATATAA
GTCCTCTTCCTTCCTTAAACCACCCTGCCATCAGCCTTGGGACAAGAAGGGCCAAGCAGA
AACACAATTTGCAGGTCCCAGGATAGTTATTGGGTACTGGAGATAACTGAAGTTCAGGCC
TTCATCCTAAGCAGTCTTACTTGCCATCCCCCCAATGTCCACCCATTCAACCAGAGCAGG
GGTGACTCAGTGTCCCCCCTGTACCACCCAGCCTCAGATTTCTGGCACCCTTCTCTGCCG
CAGATAACCTGACTCAGAAGGGGCAGGGAATTCATATATAAGATTAGCATTGAATCTAAT
CCTTATCAGGCCCCAGGAAAAAACAAGGGTTATATAATTTCCATCTTACATTTGAGGAAA
CTGAGGCCAAGGGAGGGACAGTGAGCAAGGATGTCAAATCCAGCTTCACCTGGCTCTAGA
CCCTGCCGGAGGGGCTGAAGGTGGGTCCTTCAGGAAATGCCAGGATTGCATACCCCAACC
CTATGCCCAGTCCTGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               19-174, + strand, RNAz p=0.891762
               

               
               620-724, - strand, RNAz p=0.868016

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-174, + strand, RNAz p=0.891762
               

               
               620-724, - strand, RNAz p=0.868016

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               19-736, gnl|bosTau2|chr7 (15806904-15807617)
               

               
               19-736, gnl|Hg17|chr19 (4019310-4020542)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-736, gnl|bosTau2|chr7 (15806904-15807617)
               

               
               19-736, gnl|Hg17|chr19 (4019310-4020542)

	19-174, + strand, RNAz p=0.891762
	620-724, - strand, RNAz p=0.868016

	19-736, gnl\|bosTau2\|chr7 (15806904-15807617)
	19-736, gnl\|Hg17\|chr19 (4019310-4020542)