Non-Coding RNA Search

Lng1-LNG010069G04

Sequence:


               
               GGTTGTGCATGTTTCTGATGAGGATACCAACTCTGATCTATACCTTACAGATGACAAACA
GATATTAACCACTCAAGGGCCTAAAACATCAGACCAACAGAGCATCAAAGGAGCAGGCTC
CTTAGTAAAGACACCGCCCATCATGGAGAGTAATCAAGATTCTTATGACTCTTGGGAAAT
GGCTGGTAGAGCTGATTTAGTGATGGAAGAAGAAAAGGGGGAGAGGAAAGTTGGTGACAT
GGTGAGTAAAAGCCTGGAGCTTTGTAATGATATAAGCTTAAGTGAAATAAAAGATGCATC
CAAAATAAATGAATGCAATTCTTTGAATGTGAAAGATATTGTGCCAGAAAAGCAATTGCT
TAGTTCTGCTGTAATTGCTCAGCATCGAAGGAAATCTGACTTCCCTAAAGATGAACATGA
AAGAAACACCTGCAATACAGTACAAGATGAGTTCTTGGCTATTCCTTCTACGGACACAGG
ACTACCATTATTAAAAACAGATTCTGGAAGCTGCCTTCTGCAGCCTCCTTCTTGTGCTGG
TGGAATGTCAGCTGAAAATGGCCTGGAGAAGAGTGGTTTCTCAGAACATCAAAACAAAAG
TCTTCCAAAGGTCAGCTCAGGAGATGGCATGCAGTGTTTACACTTAAAGGAGACTCTGGC
CACCCAGGAACCTGCAGAGAATCAAGTCAGACTTCGTAAAAAGAAGGAAATAAGAGAAGA
CCGAGATAGGGCGAGGCTAGACTCGATGGTGTTGCTAATCATGAAACTGGACCAGCTTGA
TCAGGACATTGAGAACGCTCTCAGCACCAGCTCTTTTCACGTCAGCACACCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGTGCATGTTTCTGATGAGGATACCAACTCTGATCTATACCTTACAGATGACAAACA
GATATTAACCACTCAAGGGCCTAAAACATCAGACCAACAGAGCATCAAAGGAGCAGGCTC
CTTAGTAAAGACACCGCCCATCATGGAGAGTAATCAAGATTCTTATGACTCTTGGGAAAT
GGCTGGTAGAGCTGATTTAGTGATGGAAGAAGAAAAGGGGGAGAGGAAAGTTGGTGACAT
GGTGAGTAAAAGCCTGGAGCTTTGTAATGATATAAGCTTAAGTGAAATAAAAGATGCATC
CAAAATAAATGAATGCAATTCTTTGAATGTGAAAGATATTGTGCCAGAAAAGCAATTGCT
TAGTTCTGCTGTAATTGCTCAGCATCGAAGGAAATCTGACTTCCCTAAAGATGAACATGA
AAGAAACACCTGCAATACAGTACAAGATGAGTTCTTGGCTATTCCTTCTACGGACACAGG
ACTACCATTATTAAAAACAGATTCTGGAAGCTGCCTTCTGCAGCCTCCTTCTTGTGCTGG
TGGAATGTCAGCTGAAAATGGCCTGGAGAAGAGTGGTTTCTCAGAACATCAAAACAAAAG
TCTTCCAAAGGTCAGCTCAGGAGATGGCATGCAGTGTTTACACTTAAAGGAGACTCTGGC
CACCCAGGAACCTGCAGAGAATCAAGTCAGACTTCGTAAAAAGAAGGAAATAAGAGAAGA
CCGAGATAGGGCGAGGCTAGACTCGATGGTGTTGCTAATCATGAAACTGGACCAGCTTGA
TCAGGACATTGAGAACGCTCTCAGCACCAGCTCTTTTCACGTCAGCACACCAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57097913|ref|XP_540003.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57097913|ref|XP_540003.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               83-202, - strand, RNAz p=0.790056
               

               
               432-551, - strand, RNAz p=0.924518

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-202, - strand, RNAz p=0.790056
               

               
               432-551, - strand, RNAz p=0.924518

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-710, gnl|bosTau2|chr3 (1630754-1630047)
               

               
               3-710, gnl|Hg17|chr8 (13401632-13400925)
               

               
               3-710, gnl|Mm7|chr8 (35705380-35704622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-710, gnl|bosTau2|chr3 (1630754-1630047)
               

               
               3-710, gnl|Hg17|chr8 (13401632-13400925)
               

               
               3-710, gnl|Mm7|chr8 (35705380-35704622)

	83-202, - strand, RNAz p=0.790056
	432-551, - strand, RNAz p=0.924518

	3-710, gnl\|bosTau2\|chr3 (1630754-1630047)
	3-710, gnl\|Hg17\|chr8 (13401632-13400925)
	3-710, gnl\|Mm7\|chr8 (35705380-35704622)