Non-Coding RNA Search

Lng1-LNG010078F10

Sequence:


               
               ATAGAAACCCTGCCCTTATTAAAGTATGATTGAAAGTATAATGGAGAATGTACTTTATAG
AGAGAGTCAAAAACAATCCTTAATGGTCACAAATTTGATGGCTTATGGTATATTTGGAAG
AAAAATGTCTTATGTTATAATTGGCTTAGACACAAATTCTCATGCTGAAGAAACAATGTA
GAAAAAGCATGAACTAGAAAGCAACCAAATCAGATTTACCTTATACTTTGCTGCTATTTA
TTAACTCAACCATTCATCAAAAATTTATTGAGAGCCTACACTCTGGAAGAAGCAGAATTA
GATGCTGGAAAGCACGGTAGCAAATAAGAGAGACCAGCTCTCTGCTTTCTGTGTGAACAC
GAACTTGTATCTTAACATTTTCATGTCTCTACCCTTGCTTAGGCAAGATGTCTGACGTTC
CTTTCAAACCTAAAACACTAAGCCTCGTGGAGGGAGAGGCTGCCCAGGCAGCCTTGGGAT
CTGAGGACTTACCTTCCTCTTAGAGGGTTAGCTCTTGTCTTGATTTCAAAACAAATTCAT
ATACATAGTTTAAAAGTGTTTTGATCAGTTTCTCATCTGCATTTGGGTCATCTTGGCAAA
GCCTAGGTGTGGCAATTCCTGCTCATAAAACTTCAGAGGTCGAAGGTCAAAGTTTGGCAA
AGGGGGACAACTTGCATCAGTATAGCTGGACAGCTGTTCCCAGCAAGCAGCCTTTGCTGC
CGCGCCACCTTGCCTTCCGACCAATACCACAGTTTCTCCTGCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGAAACCCTGCCCTTATTAAAGTATGATTGAAAGTATAATGGAGAATGTACTTTATAG
AGAGAGTCAAAAACAATCCTTAATGGTCACAAATTTGATGGCTTATGGTATATTTGGAAG
AAAAATGTCTTATGTTATAATTGGCTTAGACACAAATTCTCATGCTGAAGAAACAATGTA
GAAAAAGCATGAACTAGAAAGCAACCAAATCAGATTTACCTTATACTTTGCTGCTATTTA
TTAACTCAACCATTCATCAAAAATTTATTGAGAGCCTACACTCTGGAAGAAGCAGAATTA
GATGCTGGAAAGCACGGTAGCAAATAAGAGAGACCAGCTCTCTGCTTTCTGTGTGAACAC
GAACTTGTATCTTAACATTTTCATGTCTCTACCCTTGCTTAGGCAAGATGTCTGACGTTC
CTTTCAAACCTAAAACACTAAGCCTCGTGGAGGGAGAGGCTGCCCAGGCAGCCTTGGGAT
CTGAGGACTTACCTTCCTCTTAGAGGGTTAGCTCTTGTCTTGATTTCAAAACAAATTCAT
ATACATAGTTTAAAAGTGTTTTGATCAGTTTCTCATCTGCATTTGGGTCATCTTGGCAAA
GCCTAGGTGTGGCAATTCCTGCTCATAAAACTTCAGAGGTCGAAGGTCAAAGTTTGGCAA
AGGGGGACAACTTGCATCAGTATAGCTGGACAGCTGTTCCCAGCAAGCAGCCTTTGCTGC
CGCGCCACCTTGCCTTCCGACCAATACCACAGTTTCTCCTGCTGCTG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               370-462, - strand, RNAz p=0.917005
               

               
               626-743, - strand, RNAz p=0.746988
               

               
               643-762, - strand, RNAz p=0.572188

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-462, - strand, RNAz p=0.917005
               

               
               626-743, - strand, RNAz p=0.746988
               

               
               643-762, - strand, RNAz p=0.572188

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               122-765, gnl|bosTau2|chr26 (6615642-6614996)
               

               
               122-765, gnl|canFam2|chr28 (12208061-12208484)
               

               
               122-765, gnl|hg17|chr10 (97504743-97505157)
               

               
               122-765, gnl|Hg17|chr10 (97504742-97505378)
               

               
               122-765, gnl|loxAfr1|scaffold_184 (240814-241262)
               

               
               122-765, gnl|mm7|chr19 (40552370-40552829)
               

               
               122-765, gnl|Mm7|chr19 (40552370-40553029)
               

               
               122-765, gnl|panTro1|chr8 (99190031-99190445)
               

               
               122-765, gnl|rheMac2|chr9 (95288199-95288609)
               

               
               122-765, gnl|rn3|chr1 (245893115-245893553)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-765, gnl|bosTau2|chr26 (6615642-6614996)
               

               
               122-765, gnl|canFam2|chr28 (12208061-12208484)
               

               
               122-765, gnl|hg17|chr10 (97504743-97505157)
               

               
               122-765, gnl|Hg17|chr10 (97504742-97505378)
               

               
               122-765, gnl|loxAfr1|scaffold_184 (240814-241262)
               

               
               122-765, gnl|mm7|chr19 (40552370-40552829)
               

               
               122-765, gnl|Mm7|chr19 (40552370-40553029)
               

               
               122-765, gnl|panTro1|chr8 (99190031-99190445)
               

               
               122-765, gnl|rheMac2|chr9 (95288199-95288609)
               

               
               122-765, gnl|rn3|chr1 (245893115-245893553)

	370-462, - strand, RNAz p=0.917005
	626-743, - strand, RNAz p=0.746988
	643-762, - strand, RNAz p=0.572188

	122-765, gnl\|bosTau2\|chr26 (6615642-6614996)
	122-765, gnl\|canFam2\|chr28 (12208061-12208484)
	122-765, gnl\|hg17\|chr10 (97504743-97505157)
	122-765, gnl\|Hg17\|chr10 (97504742-97505378)
	122-765, gnl\|loxAfr1\|scaffold_184 (240814-241262)
	122-765, gnl\|mm7\|chr19 (40552370-40552829)
	122-765, gnl\|Mm7\|chr19 (40552370-40553029)
	122-765, gnl\|panTro1\|chr8 (99190031-99190445)
	122-765, gnl\|rheMac2\|chr9 (95288199-95288609)
	122-765, gnl\|rn3\|chr1 (245893115-245893553)