Non-Coding RNA Search

Lng1-LNG010089F06

Sequence:


               
               AGCTGCATGCGTTTGGACAGGCACGCTTTATCGAGCTGTCGTATATAAATCGCACACTGG
AAACTGGAAACCCATCCCTGGGTGCATCACAACAAGAGTGTCAAGGTTAAGAACAGGGAT
TCTGGAGTCTGGCTGCTTGGGTTCAATCCCTGCCCTGCTAGTGAATAACCCTGTAACGCT
GGGTAGCTTCTTCCATGCCTCACTTCTGAGGGGATGAAATGAGGGTCGTCGTGAAGATTT
AATGAGAGCATGTATGTGTTTAGCACAGTGCTCAACCCTATCTTAATAAGCTCtcttcgt
ctgtttggactgctgtaacaaaccgtcatagactgggtggcttgtaaacaatatacattt
atttgtcacTTGTGAACAATATGCATTTATTTGTCACTGTTCTGGAGGCTGGAAGCCTGG
AAATACGTGGGAAATGAAATGAAACCTGAGTCCAGGAAATGAAACCTGAGGCCAACATGG
TTGGGTTCTGGTGAGGGCTGCTGACTGCTctgagtcctcccatggggaaggggtgaggga
gctctcctgggtctcttatataagggcactaatcccattcatgagggctccaccctcatg
acctaagcaccttccacaggccccacctcctaacaccatcacatgggggttaggatttca
gcatatgaattGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGCATGCGTTTGGACAGGCACGCTTTATCGAGCTGTCGTATATAAATCGCACACTGG
AAACTGGAAACCCATCCCTGGGTGCATCACAACAAGAGTGTCAAGGTTAAGAACAGGGAT
TCTGGAGTCTGGCTGCTTGGGTTCAATCCCTGCCCTGCTAGTGAATAACCCTGTAACGCT
GGGTAGCTTCTTCCATGCCTCACTTCTGAGGGGATGAAATGAGGGTCGTCGTGAAGATTT
AATGAGAGCATGTATGTGTTTAGCACAGTGCTCAACCCTATCTTAATAAGCTCtcttcgt
ctgtttggactgctgtaacaaaccgtcatagactgggtggcttgtaaacaatatacattt
atttgtcacTTGTGAACAATATGCATTTATTTGTCACTGTTCTGGAGGCTGGAAGCCTGG
AAATACGTGGGAAATGAAATGAAACCTGAGTCCAGGAAATGAAACCTGAGGCCAACATGG
TTGGGTTCTGGTGAGGGCTGCTGACTGCTctgagtcctcccatggggaaggggtgaggga
gctctcctgggtctcttatataagggcactaatcccattcatgagggctccaccctcatg
acctaagcaccttccacaggccccacctcctaacaccatcacatgggggttaggatttca
gcatatgaattGGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               134-345, - strand, RNAz p=0.972084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-345, - strand, RNAz p=0.972084

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               50-368, gnl|bosTau2|chr16 (38930148-38930500)
               

               
               50-368, gnl|canFam2|chr2 (84799726-84799476)
               

               
               50-368, gnl|dasNov1|scaffold_65699 (4339-4111)
               

               
               50-368, gnl|echTel1|scaffold_321725 (840-1031)
               

               
               50-368, gnl|hg17|chr1 (15758032-15758271)
               

               
               50-368, gnl|loxAfr1|scaffold_139730 (4896-5132)
               

               
               50-368, gnl|panTro1|chr1 (15916169-15916409)
               

               
               50-368, gnl|rheMac2|chr1 (18471471-18471712)
               


               
               471-675, gnl|bosTau2|chr3 (22632203-22631982)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-368, gnl|bosTau2|chr16 (38930148-38930500)
               

               
               50-368, gnl|canFam2|chr2 (84799726-84799476)
               

               
               50-368, gnl|dasNov1|scaffold_65699 (4339-4111)
               

               
               50-368, gnl|echTel1|scaffold_321725 (840-1031)
               

               
               50-368, gnl|hg17|chr1 (15758032-15758271)
               

               
               50-368, gnl|loxAfr1|scaffold_139730 (4896-5132)
               

               
               50-368, gnl|panTro1|chr1 (15916169-15916409)
               

               
               50-368, gnl|rheMac2|chr1 (18471471-18471712)
               


               
               471-675, gnl|bosTau2|chr3 (22632203-22631982)

	50-368, gnl\|bosTau2\|chr16 (38930148-38930500)
	50-368, gnl\|canFam2\|chr2 (84799726-84799476)
	50-368, gnl\|dasNov1\|scaffold_65699 (4339-4111)
	50-368, gnl\|echTel1\|scaffold_321725 (840-1031)
	50-368, gnl\|hg17\|chr1 (15758032-15758271)
	50-368, gnl\|loxAfr1\|scaffold_139730 (4896-5132)
	50-368, gnl\|panTro1\|chr1 (15916169-15916409)
	50-368, gnl\|rheMac2\|chr1 (18471471-18471712)

	471-675, gnl\|bosTau2\|chr3 (22632203-22631982)