Non-Coding RNA Search

Lng1-LNG010090G03

Sequence:


               
               TTAAAAAGTTGTGTAGTGTCTGTTAAGTGGATGTAGTCATTTATCTAACTAGTATTCTAT
CAATTCATTTCTGTTTTTTTCAAATGTTTACAATTTTAAAGAACTCTGTGATGATCTTTT
TAATGCATGTACCTTTGCACAGCTGTGCAACTATCACCTTAAACAAATTCCTAGAAGTGA
CATTAATGTCAGCCGGTTCTTCAACATTATCAGCTAGAAAAAAGAAAGTTGTGATTACTT
TGAAAAATGCACTTTATATGTGTGATTCAAGACAACCAGATTCTCCCATGTGAAATAGAC
AAATCTTGTGGTCTGTCTGGTGTAGTATTCAGTAACATGTATCAAAGCTCCTTGGAGCAG
GGTAGCTGGACACTGCTGGTTTTTTAAACCAAATACTTTCTTTCTTACTATGGGAGCTCT
GATTTTTTTCAGGGCGACAGTGTATCCAATTAAAAGTAATTTACTTCCTCAGTCTCCTAT
AAACCAGGTTATCCATGTGACCTGTCAACAAAATGAAAGTGGATATTGCTAGGAGAGGTT
CAAAGTTTCCTAGTAATCATTGGATCTGTACCCAGAACAGCAACACAATGCTAGAGGTGG
AATAGCAGTATTTCAACCACAATAACAAAAGCTCTACACGCTATTAATAGCATAGGAAGC
CAGAAGGGTTTAGGTTCATAATTGCTTTAGAAGGCCAGCTTATCAACTATGGACTGCCCA
CTTCTGGATTTGTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAAGTTGTGTAGTGTCTGTTAAGTGGATGTAGTCATTTATCTAACTAGTATTCTAT
CAATTCATTTCTGTTTTTTTCAAATGTTTACAATTTTAAAGAACTCTGTGATGATCTTTT
TAATGCATGTACCTTTGCACAGCTGTGCAACTATCACCTTAAACAAATTCCTAGAAGTGA
CATTAATGTCAGCCGGTTCTTCAACATTATCAGCTAGAAAAAAGAAAGTTGTGATTACTT
TGAAAAATGCACTTTATATGTGTGATTCAAGACAACCAGATTCTCCCATGTGAAATAGAC
AAATCTTGTGGTCTGTCTGGTGTAGTATTCAGTAACATGTATCAAAGCTCCTTGGAGCAG
GGTAGCTGGACACTGCTGGTTTTTTAAACCAAATACTTTCTTTCTTACTATGGGAGCTCT
GATTTTTTTCAGGGCGACAGTGTATCCAATTAAAAGTAATTTACTTCCTCAGTCTCCTAT
AAACCAGGTTATCCATGTGACCTGTCAACAAAATGAAAGTGGATATTGCTAGGAGAGGTT
CAAAGTTTCCTAGTAATCATTGGATCTGTACCCAGAACAGCAACACAATGCTAGAGGTGG
AATAGCAGTATTTCAACCACAATAACAAAAGCTCTACACGCTATTAATAGCATAGGAAGC
CAGAAGGGTTTAGGTTCATAATTGCTTTAGAAGGCCAGCTTATCAACTATGGACTGCCCA
CTTCTGGATTTGTTTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               351-459, - strand, RNAz p=0.684061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               351-459, - strand, RNAz p=0.684061

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-548, gnl|bosTau2|chr4 (3981333-3981899)
               

               
               1-548, gnl|canFam2|chr14 (25809736-25810384)
               

               
               1-548, gnl|echTel1|scaffold_205586 (2871-2240)
               

               
               1-548, gnl|hg17|chr7 (6992779-6993416)
               

               
               1-548, gnl|Hg17|chr7 (6993365-6992793)
               

               
               1-548, gnl|loxAfr1|scaffold_1797 (39144-39781)
               

               
               1-548, gnl|mm7|chr6 (7799841-7800359)
               

               
               1-548, gnl|Mm7|chr6 (7800364-7799855)
               

               
               1-548, gnl|oryCun1|scaffold_200028 (5611-4944)
               

               
               1-548, gnl|panTro1|chr6 (7454658-7455295)
               

               
               1-548, gnl|rheMac2|chr3 (119228342-119227722)
               

               
               1-548, gnl|rn3|chr4 (33018940-33019451)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-548, gnl|bosTau2|chr4 (3981333-3981899)
               

               
               1-548, gnl|canFam2|chr14 (25809736-25810384)
               

               
               1-548, gnl|echTel1|scaffold_205586 (2871-2240)
               

               
               1-548, gnl|hg17|chr7 (6992779-6993416)
               

               
               1-548, gnl|Hg17|chr7 (6993365-6992793)
               

               
               1-548, gnl|loxAfr1|scaffold_1797 (39144-39781)
               

               
               1-548, gnl|mm7|chr6 (7799841-7800359)
               

               
               1-548, gnl|Mm7|chr6 (7800364-7799855)
               

               
               1-548, gnl|oryCun1|scaffold_200028 (5611-4944)
               

               
               1-548, gnl|panTro1|chr6 (7454658-7455295)
               

               
               1-548, gnl|rheMac2|chr3 (119228342-119227722)
               

               
               1-548, gnl|rn3|chr4 (33018940-33019451)

	1-548, gnl\|bosTau2\|chr4 (3981333-3981899)
	1-548, gnl\|canFam2\|chr14 (25809736-25810384)
	1-548, gnl\|echTel1\|scaffold_205586 (2871-2240)
	1-548, gnl\|hg17\|chr7 (6992779-6993416)
	1-548, gnl\|Hg17\|chr7 (6993365-6992793)
	1-548, gnl\|loxAfr1\|scaffold_1797 (39144-39781)
	1-548, gnl\|mm7\|chr6 (7799841-7800359)
	1-548, gnl\|Mm7\|chr6 (7800364-7799855)
	1-548, gnl\|oryCun1\|scaffold_200028 (5611-4944)
	1-548, gnl\|panTro1\|chr6 (7454658-7455295)
	1-548, gnl\|rheMac2\|chr3 (119228342-119227722)
	1-548, gnl\|rn3\|chr4 (33018940-33019451)