Non-Coding RNA Search

Lng1-LNG010095A08

Sequence:


               
               CTCCATCACATGTGGTAGTCCTGTTGTCTGTATCCTTGCTTTGGGGTAAATATGCATCTT
CATTCCAACTTGTGTCCTCATTTCTGTGACCTCAGAGGCTCTCAGGATCATGGTGCAGGA
GAATCCATAAGTTTTGGGCAATGAGAAAACAGAGAGAAGGAAACTTCTGTCCCTGTCCCA
CACCAGCTTGAAAATTATTTTCCTCCTTTCTGCAGTTCCAAGGTCAAGTTTCCCTTGGGA
GCAGCTAAGGAACTAAAGGTCACAAAAAAAAAAAAAAAAAGCTGGCAATTCACTATGCCT
TGGAGGGTTTCCCAGAAAGTAAAATGAAAATGAGATTGTCTTCACATAAGACCTCTGTAT
TTGGAGGACAGGATTCAAACAGTTTGAATATGCAGTTTCACTGTGCACTTAGGTAACCTC
ACAAAGTCCTGTTTTTTTGTTTTTTATTTTTTTCCCCTAAAGCCAAAACAGTATCAAAAA
CACTTCCTGCAGAGAACTCTAACTAGGCAGAATTCTTTCTTTTGTCATCACTGGGCTGAT
GTTTTCAAGGATTCATTTCTTAAGATAAGCCTTACGTGGTCCATTTAGCTGGAGCTCTCT
TGTGTCTTTCTGGGTAATGATGGCTGTCATCCTTGGGTCCTGCTTTGTGGTGATCTCATA
AGCTTTTACAAGGTAAGTGGCTGAAAATGTGTGGTTGGTACATGAGCAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCATCACATGTGGTAGTCCTGTTGTCTGTATCCTTGCTTTGGGGTAAATATGCATCTT
CATTCCAACTTGTGTCCTCATTTCTGTGACCTCAGAGGCTCTCAGGATCATGGTGCAGGA
GAATCCATAAGTTTTGGGCAATGAGAAAACAGAGAGAAGGAAACTTCTGTCCCTGTCCCA
CACCAGCTTGAAAATTATTTTCCTCCTTTCTGCAGTTCCAAGGTCAAGTTTCCCTTGGGA
GCAGCTAAGGAACTAAAGGTCACAAAAAAAAAAAAAAAAAGCTGGCAATTCACTATGCCT
TGGAGGGTTTCCCAGAAAGTAAAATGAAAATGAGATTGTCTTCACATAAGACCTCTGTAT
TTGGAGGACAGGATTCAAACAGTTTGAATATGCAGTTTCACTGTGCACTTAGGTAACCTC
ACAAAGTCCTGTTTTTTTGTTTTTTATTTTTTTCCCCTAAAGCCAAAACAGTATCAAAAA
CACTTCCTGCAGAGAACTCTAACTAGGCAGAATTCTTTCTTTTGTCATCACTGGGCTGAT
GTTTTCAAGGATTCATTTCTTAAGATAAGCCTTACGTGGTCCATTTAGCTGGAGCTCTCT
TGTGTCTTTCTGGGTAATGATGGCTGTCATCCTTGGGTCCTGCTTTGTGGTGATCTCATA
AGCTTTTACAAGGTAAGTGGCTGAAAATGTGTGGTTGGTACATGAGCAGGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               159-316, - strand, RNAz p=0.754684
               

               
               436-555, + strand, RNAz p=0.584626

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-316, - strand, RNAz p=0.754684
               

               
               436-555, + strand, RNAz p=0.584626

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               211-281, - strand, RNAmicro p=0.921369

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               211-281, - strand, RNAmicro p=0.921369

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-711, gnl|bosTau2|chr1 (32191063-32191749)
               

               
               1-711, gnl|Hg17|chr3 (112938815-112939486)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-711, gnl|bosTau2|chr1 (32191063-32191749)
               

               
               1-711, gnl|Hg17|chr3 (112938815-112939486)

	159-316, - strand, RNAz p=0.754684
	436-555, + strand, RNAz p=0.584626

	1-711, gnl\|bosTau2\|chr1 (32191063-32191749)
	1-711, gnl\|Hg17\|chr3 (112938815-112939486)