Lng1-LNG010096B02
|
ATGGAGTGTGCTGCGCAGGCTCTGGGCAGGGAGGGCTGGAAGAGGCGCTGGCGGGCGGGG
GTGCGCCCGAGAGTGCCCCGGCGTGTTCGCTTAGTTCAGTGAATCAGAACAATGACTGCG
CCGCTGGGTTCCCGGGAGCGCGTCGGAGGACTGTGAGCAGCCGCCGCCTGGAGAGCGGCG
GGCGGCGCAGCCTCGGCCGCGCGGTGTCAACCTCGGACTCGCGAGCTTCCAGTGCAGACC
CTGCCCAGCGCCCGCAGCCCGCGCGGAGCCGCCGGGCTCCAGCGCTGCAGACGCTACTCC
GGAGCTGTGCATTGTTGTGAGCTGGAGAAGGGGTGAGGGGATTACAAAGCCCGAAGACCC
CGAACCCCTCTTTAGCCATGTGGATACCTACAGAGCACGAGAAATACGGCGTGGTTATTG
CCAGTTTTCGAGGAACTGTCCCATATGGCCTGTCATTGGAAATTGGAGATACGGTTCAGA
TCCTGGAGAAGTGTGATGGCTGGTACAGAGGATTTGCCTTAAAAAACCCAAATATCAAGG
GAATATTTCCTTCCAGCTATGTTCACTTGAAAAATGCTTGTGTAAAGAACAAAGGACAAT
TTGAAATGGTGATTCCCACTGAAGACTCTGTTATCACAGAAATGACATCAACATTAAGAG
ACTGGGGAACCATGTGGAAACAACTCTATGTGAGAAATGAAGGCGATCTCTTCCACCGGC
TGTGGCACATCATGAAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGGAGTGTGCTGCGCAGGCTCTGGGCAGGGAGGGCTGGAAGAGGCGCTGGCGGGCGGGG
GTGCGCCCGAGAGTGCCCCGGCGTGTTCGCTTAGTTCAGTGAATCAGAACAATGACTGCG
CCGCTGGGTTCCCGGGAGCGCGTCGGAGGACTGTGAGCAGCCGCCGCCTGGAGAGCGGCG
GGCGGCGCAGCCTCGGCCGCGCGGTGTCAACCTCGGACTCGCGAGCTTCCAGTGCAGACC
CTGCCCAGCGCCCGCAGCCCGCGCGGAGCCGCCGGGCTCCAGCGCTGCAGACGCTACTCC
GGAGCTGTGCATTGTTGTGAGCTGGAGAAGGGGTGAGGGGATTACAAAGCCCGAAGACCC
CGAACCCCTCTTTAGCCATGTGGATACCTACAGAGCACGAGAAATACGGCGTGGTTATTG
CCAGTTTTCGAGGAACTGTCCCATATGGCCTGTCATTGGAAATTGGAGATACGGTTCAGA
TCCTGGAGAAGTGTGATGGCTGGTACAGAGGATTTGCCTTAAAAAACCCAAATATCAAGG
GAATATTTCCTTCCAGCTATGTTCACTTGAAAAATGCTTGTGTAAAGAACAAAGGACAAT
TTGAAATGGTGATTCCCACTGAAGACTCTGTTATCACAGAAATGACATCAACATTAAGAG
ACTGGGGAACCATGTGGAAACAACTCTATGTGAGAAATGAAGGCGATCTCTTCCACCGGC
TGTGGCACATCATGAAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
5-414, gnl|bosTau2|chr4 (28337398-28337806) |
|
5-414, gnl|canFam2|chr14 (54819088-54819715) |
|
5-414, gnl|dasNov1|scaffold_1301 (59365-60018) |
|
5-414, gnl|echTel1|scaffold_297481 (48967-48329) |
|
5-414, gnl|hg17|chr7 (111439736-111440388) |
|
5-414, gnl|Hg17|chr7 (111440500-111440108) |
|
5-414, gnl|mm7|chr12 (38279775-38279169) |
|
5-414, gnl|Mm7|chr12 (38279056-38279461) |
|
5-414, gnl|monDom2|scaffold_22 (38363368-38362516) |
|
5-414, gnl|oryCun1|scaffold_193158 (4978-4369) |
|
5-414, gnl|panTro1|chr6 (113420140-113420816) |
|
5-414, gnl|rheMac2|chr3 (149597004-149597686) |
|
5-414, gnl|rn3|chr6 (59730351-59729750) |
| |
|
557-692, gnl|bosTau2|chr4 (28539955-28540091) |
|
557-692, gnl|Hg17|chr7 (111228280-111228141) |
|
557-692, gnl|Mm7|chr12 (38464545-38464685) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-414, gnl|bosTau2|chr4 (28337398-28337806) |
|
5-414, gnl|canFam2|chr14 (54819088-54819715) |
|
5-414, gnl|dasNov1|scaffold_1301 (59365-60018) |
|
5-414, gnl|echTel1|scaffold_297481 (48967-48329) |
|
5-414, gnl|hg17|chr7 (111439736-111440388) |
|
5-414, gnl|Hg17|chr7 (111440500-111440108) |
|
5-414, gnl|mm7|chr12 (38279775-38279169) |
|
5-414, gnl|Mm7|chr12 (38279056-38279461) |
|
5-414, gnl|monDom2|scaffold_22 (38363368-38362516) |
|
5-414, gnl|oryCun1|scaffold_193158 (4978-4369) |
|
5-414, gnl|panTro1|chr6 (113420140-113420816) |
|
5-414, gnl|rheMac2|chr3 (149597004-149597686) |
|
5-414, gnl|rn3|chr6 (59730351-59729750) |
| |
|
557-692, gnl|bosTau2|chr4 (28539955-28540091) |
|
557-692, gnl|Hg17|chr7 (111228280-111228141) |
|
557-692, gnl|Mm7|chr12 (38464545-38464685) |
