Non-Coding RNA Search

Lng1-LNG010106G11

Sequence:


               
               TTTTTCTCCCTAAAACATGTCTACTTCATGACAAAGTAAGTTGGTAGCTATTCTGACAGA
TTAATTGATTTATTCAATCTTCAACAGTTATAAAATACCTACTCTGTCCCACATCCTGGA
CGAAGCACTAAAGATTAAAAAGATGGTGGGGGCCCTGTCCTTAAGGAGATTATGGCTGTC
TCTTTCTCAGCATTGTTGTCAAAAGAAGGTGGAGGCTTCTCTTTGGGGGGAAAAAAAAAA
AAGGGAATCTCAATTTTAATATGTAAACTTTACATCTACAGTTGTATTGTGTAGGCAGCA
CTCTTGATAAAAATCTCAAGACTGGTCGTGTCTGAGATCCAAAAGTAACTTATTTTTAGA
ATGAACATATCTCTAAACCCAAAGTTAGTGGCTTTTTGTTCCAAGCCACTTCTAGCTAGC
AACGTGAAAATGTCACCTTACTCATCTGCTCTTTAGAGATGATGAATATGGAGAAGTAGC
TTTAGCAGAGAATTTATATACCGTTTTAAACCAGAGCAGTTCTTTCTAAGTGTGTTTAGA
CACCCTGGAGAACAGTGTTTAAGTACAGAGGTGTACAAAGGTGGAGGGGACCTACATCAA
TTAATAAGTCAGTCCAGACTTGCTGAACGCCCAGACTGCGTGAAAGCACCGTGCCAGGGG
TGTGGGTTTAAGGAAAAAGTATAAGCTCTTGATCTCCACTAAGAGCTTCATCAGGAGGCT
GACCTGGCAACCGGAAATAGTAAAGCACTTAAATCCCTTTTTTTGCTGATGAAAGTAACA
TATTTATTGTAACACTGTTTTGGAAAATTTAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTCCCTAAAACATGTCTACTTCATGACAAAGTAAGTTGGTAGCTATTCTGACAGA
TTAATTGATTTATTCAATCTTCAACAGTTATAAAATACCTACTCTGTCCCACATCCTGGA
CGAAGCACTAAAGATTAAAAAGATGGTGGGGGCCCTGTCCTTAAGGAGATTATGGCTGTC
TCTTTCTCAGCATTGTTGTCAAAAGAAGGTGGAGGCTTCTCTTTGGGGGGAAAAAAAAAA
AAGGGAATCTCAATTTTAATATGTAAACTTTACATCTACAGTTGTATTGTGTAGGCAGCA
CTCTTGATAAAAATCTCAAGACTGGTCGTGTCTGAGATCCAAAAGTAACTTATTTTTAGA
ATGAACATATCTCTAAACCCAAAGTTAGTGGCTTTTTGTTCCAAGCCACTTCTAGCTAGC
AACGTGAAAATGTCACCTTACTCATCTGCTCTTTAGAGATGATGAATATGGAGAAGTAGC
TTTAGCAGAGAATTTATATACCGTTTTAAACCAGAGCAGTTCTTTCTAAGTGTGTTTAGA
CACCCTGGAGAACAGTGTTTAAGTACAGAGGTGTACAAAGGTGGAGGGGACCTACATCAA
TTAATAAGTCAGTCCAGACTTGCTGAACGCCCAGACTGCGTGAAAGCACCGTGCCAGGGG
TGTGGGTTTAAGGAAAAAGTATAAGCTCTTGATCTCCACTAAGAGCTTCATCAGGAGGCT
GACCTGGCAACCGGAAATAGTAAAGCACTTAAATCCCTTTTTTTGCTGATGAAAGTAACA
TATTTATTGTAACACTGTTTTGGAAAATTTAGAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               17-133, - strand, RNAz p=0.998813
               

               
               342-501, - strand, RNAz p=0.928672

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-133, - strand, RNAz p=0.998813
               

               
               342-501, - strand, RNAz p=0.928672

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               214-352, - strand, RNAmicro p=0.999286

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               214-352, - strand, RNAmicro p=0.999286

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               17-817, gnl|bosTau2|chr17 (19526676-19527464)
               

               
               17-817, gnl|Hg17|chr4 (124698440-124699467)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-817, gnl|bosTau2|chr17 (19526676-19527464)
               

               
               17-817, gnl|Hg17|chr4 (124698440-124699467)

	17-133, - strand, RNAz p=0.998813
	342-501, - strand, RNAz p=0.928672

	17-817, gnl\|bosTau2\|chr17 (19526676-19527464)
	17-817, gnl\|Hg17\|chr4 (124698440-124699467)