Non-Coding RNA Search

Lng1-LNG010108H09

Sequence:


               
               GCAAAGCACTCTGGATTCCCTGTGAGGATGGATAATGCTGTGCCAATTGTACCCCAGGCA
CCAGCTGCTCAGCCACTACAGATACAGTCGGGAGTTCTTACACAGGTAAAAGCAGAGCAG
CTTGGATGCTCAGTAGTGCTCACGTTCTCTGAAATACTGTTGAAAATCAACATATTTTGT
CCTAGAAAATGGTATTTGCTTTGACCATGAGAGCTTTCTTGGTCATGATTCAGTGGACTT
AAAATGCAGCATCTATACTGGACTGACATACTCATCCCTAACACTATTGCAACTCTGCTA
GTATCTCTTCCTTAGACTTGGAGAGATAAATATCCCAACTTTGAGAAATTGTCTCCTGAG
TGAATTTATTCAAATTTTGTGGGATGCAGTTAATTTTTTTATCTTGATGCTTTTAAAGGT
ATAGAACATATGTAATGACACCTTGATTCTAAAAGTAAAAGGTTTCCCTTTTGCGCTCTT
AGTGTCCCCTTAACTCATTCTTTCAGACTTTTATCACAGTTAAGAGGCTGGATCACATCA
AGATGCCTCTTCAAggagttcccatcatggtgcagcggaaacgaatccgactaggccctg
tgaggtttcgggttcgatccctggcctcactcagtgggttaaggatctggtgttgccgtg
agctgtggtgtaggtcacagatgtggctcagatcttgcattgctgtggctgtggtgtagg
ccagcagctgtagctccaattagacccctagcctgggaacctccatgtgccAACAAGGGT
GTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAGCACTCTGGATTCCCTGTGAGGATGGATAATGCTGTGCCAATTGTACCCCAGGCA
CCAGCTGCTCAGCCACTACAGATACAGTCGGGAGTTCTTACACAGGTAAAAGCAGAGCAG
CTTGGATGCTCAGTAGTGCTCACGTTCTCTGAAATACTGTTGAAAATCAACATATTTTGT
CCTAGAAAATGGTATTTGCTTTGACCATGAGAGCTTTCTTGGTCATGATTCAGTGGACTT
AAAATGCAGCATCTATACTGGACTGACATACTCATCCCTAACACTATTGCAACTCTGCTA
GTATCTCTTCCTTAGACTTGGAGAGATAAATATCCCAACTTTGAGAAATTGTCTCCTGAG
TGAATTTATTCAAATTTTGTGGGATGCAGTTAATTTTTTTATCTTGATGCTTTTAAAGGT
ATAGAACATATGTAATGACACCTTGATTCTAAAAGTAAAAGGTTTCCCTTTTGCGCTCTT
AGTGTCCCCTTAACTCATTCTTTCAGACTTTTATCACAGTTAAGAGGCTGGATCACATCA
AGATGCCTCTTCAAggagttcccatcatggtgcagcggaaacgaatccgactaggccctg
tgaggtttcgggttcgatccctggcctcactcagtgggttaaggatctggtgttgccgtg
agctgtggtgtaggtcacagatgtggctcagatcttgcattgctgtggctgtggtgtagg
ccagcagctgtagctccaattagacccctagcctgggaacctccatgtgccAACAAGGGT
GTAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.698055
               

               
               437-555, - strand, RNAz p=0.856929

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.698055
               

               
               437-555, - strand, RNAz p=0.856929

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               105-207, + strand, RNAmicro p=0.984716

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               105-207, + strand, RNAmicro p=0.984716

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-555, gnl|bosTau2|chr3 (27198856-27198325)
               

               
               2-555, gnl|Hg17|chr1 (114216999-114217558)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-555, gnl|bosTau2|chr3 (27198856-27198325)
               

               
               2-555, gnl|Hg17|chr1 (114216999-114217558)

	120-239, - strand, RNAz p=0.698055
	437-555, - strand, RNAz p=0.856929

	2-555, gnl\|bosTau2\|chr3 (27198856-27198325)
	2-555, gnl\|Hg17\|chr1 (114216999-114217558)