Non-Coding RNA Search

Lng1-LNG010110F07

Sequence:


               
               TTTTTACCATCAAGTATGATATAAACTGTAGGAGTTTTTGGTAGCCATACTAGATCTTTC
ATAAAGGGCCCTAACCCTGTTTAAAATCAAGAGACACCAATGTTAAGGCTGGCACTTTTA
GTAGAAAGAGACTGTCTTTGAGATTTACTTACCACAGCTTTTCCAGGCATGGAACAGAGG
CCAGCCTGCAATAGAATAAATTAAAGGAGGAATTGGTTGGAATAAGAACATCTTGGAGTC
TGTCTGCTGCGGGCACAGCAGGGTCTGGGGAATCAAAATCTTTTCAGAGTAACACCTCTT
CCTTCTCTTTTTACACCTCCACTTCAGTCTCAGCAGATCCTCCTCTACCTTTCATCATCT
CATTTTGCTATCATCATCTCACGAGTAGCTCCAGACTTATGGCCAGCCAGCCTATCACCT
CTAAAGAAGAAAGGGCCTCATTTTTCAATAGTTTTGAGAAAAAGTTCTCCGGATTCATTG
TTTGGACCAACTCGGGTCATGTGGCCATCCCTGAGCCAATCACCATAGCCAAGGAATGGA
GTGACCTGACTGGTCAAGCCCAAGCCACATGCCCCTGCCTCTTGGAACCAAGAGATGGGG
TCAGGCCCACCAAGTCTGATGGACTGAGAAGGGGAGGGGGAATTTTCCAAAGAAAAATCA
AAATATTTTTGCTAGAAAATTAGGGAATGGGTCTCAACCAGGCATAAACCACAGCTTCCA
CCTCCTTCCTGTAGAAGCCCTCTCTCTGTGTACTAACACTGGACCTCTTTAAATTTTAGT
TTCCTCATGTGCAGTATGCAGGTGGTGACACCTGCCCTTCTTGGCCATATCTGAAAGGTC
CAGTGAGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTACCATCAAGTATGATATAAACTGTAGGAGTTTTTGGTAGCCATACTAGATCTTTC
ATAAAGGGCCCTAACCCTGTTTAAAATCAAGAGACACCAATGTTAAGGCTGGCACTTTTA
GTAGAAAGAGACTGTCTTTGAGATTTACTTACCACAGCTTTTCCAGGCATGGAACAGAGG
CCAGCCTGCAATAGAATAAATTAAAGGAGGAATTGGTTGGAATAAGAACATCTTGGAGTC
TGTCTGCTGCGGGCACAGCAGGGTCTGGGGAATCAAAATCTTTTCAGAGTAACACCTCTT
CCTTCTCTTTTTACACCTCCACTTCAGTCTCAGCAGATCCTCCTCTACCTTTCATCATCT
CATTTTGCTATCATCATCTCACGAGTAGCTCCAGACTTATGGCCAGCCAGCCTATCACCT
CTAAAGAAGAAAGGGCCTCATTTTTCAATAGTTTTGAGAAAAAGTTCTCCGGATTCATTG
TTTGGACCAACTCGGGTCATGTGGCCATCCCTGAGCCAATCACCATAGCCAAGGAATGGA
GTGACCTGACTGGTCAAGCCCAAGCCACATGCCCCTGCCTCTTGGAACCAAGAGATGGGG
TCAGGCCCACCAAGTCTGATGGACTGAGAAGGGGAGGGGGAATTTTCCAAAGAAAAATCA
AAATATTTTTGCTAGAAAATTAGGGAATGGGTCTCAACCAGGCATAAACCACAGCTTCCA
CCTCCTTCCTGTAGAAGCCCTCTCTCTGTGTACTAACACTGGACCTCTTTAAATTTTAGT
TTCCTCATGTGCAGTATGCAGGTGGTGACACCTGCCCTTCTTGGCCATATCTGAAAGGTC
CAGTGAGGCAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               453-682, - strand, RNAz p=0.987579
               

               
               745-851, - strand, RNAz p=0.871613

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-682, - strand, RNAz p=0.987579
               

               
               745-851, - strand, RNAz p=0.871613

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               508-588, + strand, RNAmicro p=0.998944

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               508-588, + strand, RNAmicro p=0.998944

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-851, gnl|bosTau2|chr7 (44305493-44306376)
               

               
               2-851, gnl|Hg17|chr5 (153735049-153735916)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-851, gnl|bosTau2|chr7 (44305493-44306376)
               

               
               2-851, gnl|Hg17|chr5 (153735049-153735916)

	453-682, - strand, RNAz p=0.987579
	745-851, - strand, RNAz p=0.871613

	2-851, gnl\|bosTau2\|chr7 (44305493-44306376)
	2-851, gnl\|Hg17\|chr5 (153735049-153735916)