Non-Coding RNA Search

Lng1-LNG010111A11

Sequence:


               
               CTGGATTTGGAAAAGAGGTTTTCTTGGGGTATTGTTAAAATGGGCCCGAGTCAGTCACAA
GCTCACATTGTTTCTATGATTCGTATTATTGTTAATGTAAGTTGGCAGCATTCATCAATG
ACAAAGCGGTAGACCAGTGTTTGTAAGGAACTTTTTCGTTTTGTTTTTTGGCTGCCTGGA
GGCGTATGGAGTTCTTGGTcagggatcggatctgagccgtagttgtgaccctacgtggca
gttgcggcaacacaggatcctttaacccactgtgccaggctggggatcgaacctccattc
tggcgctgcagagactccacctatccctttgtgtcccagcgggaactcTGGTAACCACTG
TTTTTAACACACAACCCTGCTGCAGTTTTTACTCATGTTTTTCTCATCTAAAGTAGCTTC
CTCTCTCAGAAAATAAGACTGTAGGAGAAAGTAGTTTCCTGATCCTCAGGATTGCAATGA
AACGCCTTCTGCCTGGTGGTTTTTGGTTAATGCCAAGAGTGGTTTATAATGAGTGACAAT
TTGTGTGATCATTATCTCAACCACTTGTATGGCATTTCGGTAAATATTATTGGATTGAAA
ACTATAAACATGCCCTTAAAAAGGTAAGAATGAGCTCTCCCCGTTATCTTTCTACTCTCA
TTGATACACGATAAAAAGTACAGACCAGAAGCTGAAGTTTTAAAATAGCAGCAAAACAAT
TAGGGAAGAAATCAGTGGCTGATAATGTAGTGATACATATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGATTTGGAAAAGAGGTTTTCTTGGGGTATTGTTAAAATGGGCCCGAGTCAGTCACAA
GCTCACATTGTTTCTATGATTCGTATTATTGTTAATGTAAGTTGGCAGCATTCATCAATG
ACAAAGCGGTAGACCAGTGTTTGTAAGGAACTTTTTCGTTTTGTTTTTTGGCTGCCTGGA
GGCGTATGGAGTTCTTGGTcagggatcggatctgagccgtagttgtgaccctacgtggca
gttgcggcaacacaggatcctttaacccactgtgccaggctggggatcgaacctccattc
tggcgctgcagagactccacctatccctttgtgtcccagcgggaactcTGGTAACCACTG
TTTTTAACACACAACCCTGCTGCAGTTTTTACTCATGTTTTTCTCATCTAAAGTAGCTTC
CTCTCTCAGAAAATAAGACTGTAGGAGAAAGTAGTTTCCTGATCCTCAGGATTGCAATGA
AACGCCTTCTGCCTGGTGGTTTTTGGTTAATGCCAAGAGTGGTTTATAATGAGTGACAAT
TTGTGTGATCATTATCTCAACCACTTGTATGGCATTTCGGTAAATATTATTGGATTGAAA
ACTATAAACATGCCCTTAAAAAGGTAAGAATGAGCTCTCCCCGTTATCTTTCTACTCTCA
TTGATACACGATAAAAAGTACAGACCAGAAGCTGAAGTTTTAAAATAGCAGCAAAACAAT
TAGGGAAGAAATCAGTGGCTGATAATGTAGTGATACATATTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               472-591, + strand, RNAz p=0.841232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               472-591, + strand, RNAz p=0.841232

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               396-741, gnl|bosTau2|chr7 (24128570-24128220)
               

               
               396-741, gnl|canFam2|chr11 (16012634-16012995)
               

               
               396-741, gnl|dasNov1|scaffold_778 (38454-38111)
               

               
               396-741, gnl|echTel1|scaffold_313297 (82021-81678)
               

               
               396-741, gnl|hg17|chr5 (122516330-122516687)
               

               
               396-741, gnl|Hg17|chr5 (122516331-122516682)
               

               
               396-741, gnl|loxAfr1|scaffold_42371 (14115-14478)
               

               
               396-741, gnl|mm7|chr18 (53913002-53913324)
               

               
               396-741, gnl|panTro1|chr4 (128786277-128786635)
               

               
               396-741, gnl|rheMac2|chr6 (119562856-119563213)
               

               
               396-741, gnl|rn3|chr18 (49052254-49052564)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               396-741, gnl|bosTau2|chr7 (24128570-24128220)
               

               
               396-741, gnl|canFam2|chr11 (16012634-16012995)
               

               
               396-741, gnl|dasNov1|scaffold_778 (38454-38111)
               

               
               396-741, gnl|echTel1|scaffold_313297 (82021-81678)
               

               
               396-741, gnl|hg17|chr5 (122516330-122516687)
               

               
               396-741, gnl|Hg17|chr5 (122516331-122516682)
               

               
               396-741, gnl|loxAfr1|scaffold_42371 (14115-14478)
               

               
               396-741, gnl|mm7|chr18 (53913002-53913324)
               

               
               396-741, gnl|panTro1|chr4 (128786277-128786635)
               

               
               396-741, gnl|rheMac2|chr6 (119562856-119563213)
               

               
               396-741, gnl|rn3|chr18 (49052254-49052564)

	396-741, gnl\|bosTau2\|chr7 (24128570-24128220)
	396-741, gnl\|canFam2\|chr11 (16012634-16012995)
	396-741, gnl\|dasNov1\|scaffold_778 (38454-38111)
	396-741, gnl\|echTel1\|scaffold_313297 (82021-81678)
	396-741, gnl\|hg17\|chr5 (122516330-122516687)
	396-741, gnl\|Hg17\|chr5 (122516331-122516682)
	396-741, gnl\|loxAfr1\|scaffold_42371 (14115-14478)
	396-741, gnl\|mm7\|chr18 (53913002-53913324)
	396-741, gnl\|panTro1\|chr4 (128786277-128786635)
	396-741, gnl\|rheMac2\|chr6 (119562856-119563213)
	396-741, gnl\|rn3\|chr18 (49052254-49052564)