Non-Coding RNA Search

LyN1-MLN01A050068

Sequence:


               
               AATTGTAGACACACACACACAAATTCTTAGAGACTATGGATCCAAAGCGCAGCTCCCTCT
ACCTCATTCCCTTTCACTTTCCAGTCCACTTTTCTTGGTAATTCTCTTGACCCCCTTCTC
CATCTTTCTGTACTGACCAAGGATCATCTCCAAGAAGGAGCTGGAGAGAAACTGTATTTG
AGCCCATGCCCTTAATATTAGCCATTGATCACAACAGTGTTGAGAAGGCTTCTTGGGCCA
AGCTGGCAGAATCCTGCAGAACCACTAAGTTGATTGAGTGGGGTTCATTTACGCTCTCCT
CTCTGGTCTTGTGGCTAACGTGGTTGTAGAGAAATTGACCTGAGCTATTCTGAAAACGAT
CTTCAGCCCCTATAGCTGGAGCCCATGCGCTGAAAACAACAACAAAAAACCAAAGAAAAA
CAAAAAAAAAAACCAAAATCTGGTTTCAGTTATCCTAACAACTTTGAATGCTCAAGACGG
ACACCTTGAAAGGTTATAGGAACTTGTAAACATTTTCCCAGGCCCAATTATCAGGCCTTT
TCGTGAAGGCTGCGGCGAAGATTCAGGCGGGAACCGTTCCCAGGGCAGGTTTAGAATCAC
AGGAGGGAGGGATAGGAGCTGAGATGAGCTGGTGAGAACACACTCCCTGAGTGCCTGCTA
GCATCAGGCTCAGACCACCAACGTCTCCCTAACTAGGAAGTTGGGGACAGAAGGGACCTG
GGGCCAGGGTTGGCCCTCGTGGAGGGAGAGAGGAAGAAATGCTTATTTATCTGCCTTAGA
CAGTATTTTCATTTAGAAAGTATTTTGGTTACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTGTAGACACACACACACAAATTCTTAGAGACTATGGATCCAAAGCGCAGCTCCCTCT
ACCTCATTCCCTTTCACTTTCCAGTCCACTTTTCTTGGTAATTCTCTTGACCCCCTTCTC
CATCTTTCTGTACTGACCAAGGATCATCTCCAAGAAGGAGCTGGAGAGAAACTGTATTTG
AGCCCATGCCCTTAATATTAGCCATTGATCACAACAGTGTTGAGAAGGCTTCTTGGGCCA
AGCTGGCAGAATCCTGCAGAACCACTAAGTTGATTGAGTGGGGTTCATTTACGCTCTCCT
CTCTGGTCTTGTGGCTAACGTGGTTGTAGAGAAATTGACCTGAGCTATTCTGAAAACGAT
CTTCAGCCCCTATAGCTGGAGCCCATGCGCTGAAAACAACAACAAAAAACCAAAGAAAAA
CAAAAAAAAAAACCAAAATCTGGTTTCAGTTATCCTAACAACTTTGAATGCTCAAGACGG
ACACCTTGAAAGGTTATAGGAACTTGTAAACATTTTCCCAGGCCCAATTATCAGGCCTTT
TCGTGAAGGCTGCGGCGAAGATTCAGGCGGGAACCGTTCCCAGGGCAGGTTTAGAATCAC
AGGAGGGAGGGATAGGAGCTGAGATGAGCTGGTGAGAACACACTCCCTGAGTGCCTGCTA
GCATCAGGCTCAGACCACCAACGTCTCCCTAACTAGGAAGTTGGGGACAGAAGGGACCTG
GGGCCAGGGTTGGCCCTCGTGGAGGGAGAGAGGAAGAAATGCTTATTTATCTGCCTTAGA
CAGTATTTTCATTTAGAAAGTATTTTGGTTACTGT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               52-163, - strand, RNAz p=0.98032
               

               
               320-479, - strand, RNAz p=0.988428
               

               
               633-815, - strand, RNAz p=0.969349

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-163, - strand, RNAz p=0.98032
               

               
               320-479, - strand, RNAz p=0.988428
               

               
               633-815, - strand, RNAz p=0.969349

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-815, gnl|bosTau2|chr29 (17649475-17648687)
               

               
               13-815, gnl|Hg17|chr11 (19904377-19905158)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-815, gnl|bosTau2|chr29 (17649475-17648687)
               

               
               13-815, gnl|Hg17|chr11 (19904377-19905158)

	52-163, - strand, RNAz p=0.98032
	320-479, - strand, RNAz p=0.988428
	633-815, - strand, RNAz p=0.969349

	13-815, gnl\|bosTau2\|chr29 (17649475-17648687)
	13-815, gnl\|Hg17\|chr11 (19904377-19905158)