Non-Coding RNA Search

LyN1-MLN01A100004

Sequence:


               
               AGTCTGAGGAGTTCCcagcaggttaaggatctggcattgccactacagctactcaggtca
ctgctgtggcacagatttgatccctggcctgggaatttctgcatgccatggacatggccc
aagaaaaGGTATAAAATCCAATTTTCCATCTCCCGTGAAGATGCAGTAGGCTGGGTTTTG
TGGGAATAGGAGCCCAAATCTTCAGGCTAATACTTGATTTTTTTTAGGGAGGCACAGAGG
GTGTGGGTTGGTAGTAACCTGGAATAAGGTACTTTCTACTGTGTAACCAGGGGTCCTCCC
ACCCCATCCCCCAGGGTTTGCCATTGAAGGCCCCTCCCAGGCAAAGATAGAGTATGACGA
CCAGAATGATGGCTCGTGTGATGTCAAGTACTGGCCCAAGGAGCCAGGTGAATATGCGGT
TCACATCATGTGTGACGATGAAGACATCAAGGACAGTCCCTACATGGCCTTCATCCACCC
GGCCTCAGGAGACTACAACCCGGATCTGGTGAGTCAACTTATCATGTTGACTCTCTCTTC
TCTTCCCTGGCCCCTGGCCCTCTCCCCATTGCCCAGAGAGCTGCCTTGAGCAGCATGTGG
AGAAATGGCAGAGAAGAGCCGTTAAGAGCTCAGGAAGGAAAAAGACCAGAATTAGAAGCC
TAGTAGTACCTCTTAGTATATTTCTAAAATTGGGCAAGTAAACTTACCTCTCTGACTCTT
AATATCTTCCTCTATAAAATGGGAAGGATAAACTGTCTGCTTCCTAGAGTTTCTGGCATG
ATTTGAGGAGGTAACATGAATAAAGACAGCCCTTAAGTGTTCCTGTTGTGCCTCAGCCAG
TAAGGATCTGGTGGTGTTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTGAGGAGTTCCcagcaggttaaggatctggcattgccactacagctactcaggtca
ctgctgtggcacagatttgatccctggcctgggaatttctgcatgccatggacatggccc
aagaaaaGGTATAAAATCCAATTTTCCATCTCCCGTGAAGATGCAGTAGGCTGGGTTTTG
TGGGAATAGGAGCCCAAATCTTCAGGCTAATACTTGATTTTTTTTAGGGAGGCACAGAGG
GTGTGGGTTGGTAGTAACCTGGAATAAGGTACTTTCTACTGTGTAACCAGGGGTCCTCCC
ACCCCATCCCCCAGGGTTTGCCATTGAAGGCCCCTCCCAGGCAAAGATAGAGTATGACGA
CCAGAATGATGGCTCGTGTGATGTCAAGTACTGGCCCAAGGAGCCAGGTGAATATGCGGT
TCACATCATGTGTGACGATGAAGACATCAAGGACAGTCCCTACATGGCCTTCATCCACCC
GGCCTCAGGAGACTACAACCCGGATCTGGTGAGTCAACTTATCATGTTGACTCTCTCTTC
TCTTCCCTGGCCCCTGGCCCTCTCCCCATTGCCCAGAGAGCTGCCTTGAGCAGCATGTGG
AGAAATGGCAGAGAAGAGCCGTTAAGAGCTCAGGAAGGAAAAAGACCAGAATTAGAAGCC
TAGTAGTACCTCTTAGTATATTTCTAAAATTGGGCAAGTAAACTTACCTCTCTGACTCTT
AATATCTTCCTCTATAAAATGGGAAGGATAAACTGTCTGCTTCCTAGAGTTTCTGGCATG
ATTTGAGGAGGTAACATGAATAAAGACAGCCCTTAAGTGTTCCTGTTGTGCCTCAGCCAG
TAAGGATCTGGTGGTGTTGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               221-337, - strand, RNAz p=0.63125
               

               
               538-652, - strand, RNAz p=0.751488

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-337, - strand, RNAz p=0.63125
               

               
               538-652, - strand, RNAz p=0.751488

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               121-674, gnl|bosTau2|chr22 (31793605-31794155)
               

               
               121-674, gnl|Hg17|chr3 (58067238-58067782)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-674, gnl|bosTau2|chr22 (31793605-31794155)
               

               
               121-674, gnl|Hg17|chr3 (58067238-58067782)

	221-337, - strand, RNAz p=0.63125
	538-652, - strand, RNAz p=0.751488

	121-674, gnl\|bosTau2\|chr22 (31793605-31794155)
	121-674, gnl\|Hg17\|chr3 (58067238-58067782)