Non-Coding RNA Search

LyN1-MLN01A100033

Sequence:


               
               CTCACAGCCAGCTGACTCCAGGCCTTTGGCAGCTCTGTGAGGGAACTCGGTGTTAAGAGT
GAGCCGTCTAggagttcccctcgtggctcagtggttaacgaattcgactaggaaccatga
ggttgtgggttcggtccctgcccttgctcagtgggttaacgatccggcgttgctgtgagc
tgtggtgtaggtcgtagacatggctcagatcccgcgttgctgtggctctgatgtaggccg
gcggctacagctccgatttgacccctagcttgggaacctccatatgcttcgggaatggcc
caagaaatggcAAAAAAAGACAAAAAAAAAAAAAAAAGTGAGCTGTCTAGAGTTCCCTGG
TGGGGCTCAGAGGGCTAAGGATCCCGTATTGTCACTAGCGTGGTGTGGGTTCAGTCCCTG
GCCTGGGAACTGCCACATGCCACGGGCGCAGCCAGAAAGGAGGGAGCGGTTCTGAGCTTG
TCTGGAAGAGGGACCCTGGAAGCACAGTTTCATCCGGGGTTCTGCATGGGATGCCGTGTC
TGTCTGCTCTTCACTAAGGAGAGCCTTTGGGCCTTCGGGCCTCCAGCCAGTCTTCCAGCT
CTGTCCTCATCCTTCTCTCCCAGTCTCCAGGGAAACCACATTGGGGAATCTGGTGCCAGG
ATGATCTCAGAAGCTATCAAGACAAATGCTCCCTCGTGCACTGTTGAAATGTGAGCAAAA
CATTTCCTGCCCAGGCAGGACAACAGGCAGAGCCACAGCTGGACGCTTTCACACAGAAGG
ACCGTTTCCCGGGGCGCCTTCCTGGGGTCTGGGAACGATGCGGACCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACAGCCAGCTGACTCCAGGCCTTTGGCAGCTCTGTGAGGGAACTCGGTGTTAAGAGT
GAGCCGTCTAggagttcccctcgtggctcagtggttaacgaattcgactaggaaccatga
ggttgtgggttcggtccctgcccttgctcagtgggttaacgatccggcgttgctgtgagc
tgtggtgtaggtcgtagacatggctcagatcccgcgttgctgtggctctgatgtaggccg
gcggctacagctccgatttgacccctagcttgggaacctccatatgcttcgggaatggcc
caagaaatggcAAAAAAAGACAAAAAAAAAAAAAAAAGTGAGCTGTCTAGAGTTCCCTGG
TGGGGCTCAGAGGGCTAAGGATCCCGTATTGTCACTAGCGTGGTGTGGGTTCAGTCCCTG
GCCTGGGAACTGCCACATGCCACGGGCGCAGCCAGAAAGGAGGGAGCGGTTCTGAGCTTG
TCTGGAAGAGGGACCCTGGAAGCACAGTTTCATCCGGGGTTCTGCATGGGATGCCGTGTC
TGTCTGCTCTTCACTAAGGAGAGCCTTTGGGCCTTCGGGCCTCCAGCCAGTCTTCCAGCT
CTGTCCTCATCCTTCTCTCCCAGTCTCCAGGGAAACCACATTGGGGAATCTGGTGCCAGG
ATGATCTCAGAAGCTATCAAGACAAATGCTCCCTCGTGCACTGTTGAAATGTGAGCAAAA
CATTTCCTGCCCAGGCAGGACAACAGGCAGAGCCACAGCTGGACGCTTTCACACAGAAGG
ACCGTTTCCCGGGGCGCCTTCCTGGGGTCTGGGAACGATGCGGACCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               573-692, - strand, RNAz p=0.658345

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               573-692, - strand, RNAz p=0.658345

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               461-826, gnl|bosTau2|chr25 (515508-515159)
               

               
               461-826, gnl|Hg17|chr16 (3532064-3531720)
               

               
               461-826, gnl|Mm7|chr16 (3619244-3618915)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               461-826, gnl|bosTau2|chr25 (515508-515159)
               

               
               461-826, gnl|Hg17|chr16 (3532064-3531720)
               

               
               461-826, gnl|Mm7|chr16 (3619244-3618915)

	461-826, gnl\|bosTau2\|chr25 (515508-515159)
	461-826, gnl\|Hg17\|chr16 (3532064-3531720)
	461-826, gnl\|Mm7\|chr16 (3619244-3618915)