Non-Coding RNA Search

LyN1-MLN01B030042

Sequence:


               
               TGGCATTCCAGGACATGACTACAGCTAATTTGCTGAGAGCCTCTGAACATACCCCAAGCC
TGCTCAGGACATCTGCTGAGAAGTTAAATCATTTTAAGTGGAGGAATTAGGCTAATGTTT
TCTGCTAAGGGAAAAAAAAAACCGTGAATCTTGGTATTCCGTGCAAGACTTTTAATAGGG
GAAACGAATTATGCTGCAGATTAGACAAAAGAAATAAATCCATCTTATTTTACTAGGAGC
TTGACACTTTTATTTAGAAAATTTATATTTCTGAATGCTTCCTTCATACATTACAGATGC
ATTTCAAATGTTACTCTGTGAGGTTAATAGTCTGTGCCTTAAAAACAGTTCAGGGTGAAA
GCGGGGATTGGGACCACTTTGAAGTAAGAAAGAAAGAAGATCTAATGATAAGATGAGTCA
AAGAGCATAACAAATCTTTTTCTTGCAAAAGCACAGAAATTCTGATGTGCCTGAAAGATT
CTGAATAGAGAAATACTCTCTTGCAAATTACTTTTGCATCAGCACTTACCTCCCCAAGAC
TTTAACATGGAAAATCTAAATAGGAATTTTATACAATAGACCATCATTCACAATAGATCA
GTGATGGAGGTACATTTTCCTATTCATAGGTTCAATGTTGAATGCTATTTGCCAGGCACG
GAGAATAAACTGGTGAGTTATTATTTGCTGGAGACAATGTGAGGAATTCTAATTTAGGAA
ATAAAAGGCAGCTATGAAGTCGATTCTGATTGGTTTTCAAATAAGTGCTCCAGGGAGTTC
CCGTCCGTGTGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCATTCCAGGACATGACTACAGCTAATTTGCTGAGAGCCTCTGAACATACCCCAAGCC
TGCTCAGGACATCTGCTGAGAAGTTAAATCATTTTAAGTGGAGGAATTAGGCTAATGTTT
TCTGCTAAGGGAAAAAAAAAACCGTGAATCTTGGTATTCCGTGCAAGACTTTTAATAGGG
GAAACGAATTATGCTGCAGATTAGACAAAAGAAATAAATCCATCTTATTTTACTAGGAGC
TTGACACTTTTATTTAGAAAATTTATATTTCTGAATGCTTCCTTCATACATTACAGATGC
ATTTCAAATGTTACTCTGTGAGGTTAATAGTCTGTGCCTTAAAAACAGTTCAGGGTGAAA
GCGGGGATTGGGACCACTTTGAAGTAAGAAAGAAAGAAGATCTAATGATAAGATGAGTCA
AAGAGCATAACAAATCTTTTTCTTGCAAAAGCACAGAAATTCTGATGTGCCTGAAAGATT
CTGAATAGAGAAATACTCTCTTGCAAATTACTTTTGCATCAGCACTTACCTCCCCAAGAC
TTTAACATGGAAAATCTAAATAGGAATTTTATACAATAGACCATCATTCACAATAGATCA
GTGATGGAGGTACATTTTCCTATTCATAGGTTCAATGTTGAATGCTATTTGCCAGGCACG
GAGAATAAACTGGTGAGTTATTATTTGCTGGAGACAATGTGAGGAATTCTAATTTAGGAA
ATAAAAGGCAGCTATGAAGTCGATTCTGATTGGTTTTCAAATAAGTGCTCCAGGGAGTTC
CCGTCCGTGTGGCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               322-429, + strand, RNAz p=0.534702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               322-429, + strand, RNAz p=0.534702

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               4-769, gnl|bosTau2|chr13 (10875276-10874521)
               

               
               4-769, gnl|canFam2|chr2 (6628746-6628140)
               

               
               4-769, gnl|dasNov1|scaffold_35996 (3348-3955)
               

               
               4-769, gnl|echTel1|scaffold_261725 (391-1006)
               

               
               4-769, gnl|hg17|chr10 (33411376-33412017)
               

               
               4-769, gnl|Hg17|chr10 (33411458-33412511)
               

               
               4-769, gnl|loxAfr1|scaffold_4562 (69939-70551)
               

               
               4-769, gnl|mm7|chr8 (127208326-127207738)
               

               
               4-769, gnl|monDom2|scaffold_7 (35480531-35479903)
               

               
               4-769, gnl|oryCun1|scaffold_52252 (1252-648)
               

               
               4-769, gnl|panTro1|chr8 (33787733-33788374)
               

               
               4-769, gnl|rheMac2|chr9 (33270450-33271088)
               

               
               4-769, gnl|rn3|chr19 (58757728-58758314)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-769, gnl|bosTau2|chr13 (10875276-10874521)
               

               
               4-769, gnl|canFam2|chr2 (6628746-6628140)
               

               
               4-769, gnl|dasNov1|scaffold_35996 (3348-3955)
               

               
               4-769, gnl|echTel1|scaffold_261725 (391-1006)
               

               
               4-769, gnl|hg17|chr10 (33411376-33412017)
               

               
               4-769, gnl|Hg17|chr10 (33411458-33412511)
               

               
               4-769, gnl|loxAfr1|scaffold_4562 (69939-70551)
               

               
               4-769, gnl|mm7|chr8 (127208326-127207738)
               

               
               4-769, gnl|monDom2|scaffold_7 (35480531-35479903)
               

               
               4-769, gnl|oryCun1|scaffold_52252 (1252-648)
               

               
               4-769, gnl|panTro1|chr8 (33787733-33788374)
               

               
               4-769, gnl|rheMac2|chr9 (33270450-33271088)
               

               
               4-769, gnl|rn3|chr19 (58757728-58758314)

	4-769, gnl\|bosTau2\|chr13 (10875276-10874521)
	4-769, gnl\|canFam2\|chr2 (6628746-6628140)
	4-769, gnl\|dasNov1\|scaffold_35996 (3348-3955)
	4-769, gnl\|echTel1\|scaffold_261725 (391-1006)
	4-769, gnl\|hg17\|chr10 (33411376-33412017)
	4-769, gnl\|Hg17\|chr10 (33411458-33412511)
	4-769, gnl\|loxAfr1\|scaffold_4562 (69939-70551)
	4-769, gnl\|mm7\|chr8 (127208326-127207738)
	4-769, gnl\|monDom2\|scaffold_7 (35480531-35479903)
	4-769, gnl\|oryCun1\|scaffold_52252 (1252-648)
	4-769, gnl\|panTro1\|chr8 (33787733-33788374)
	4-769, gnl\|rheMac2\|chr9 (33270450-33271088)
	4-769, gnl\|rn3\|chr19 (58757728-58758314)