Non-Coding RNA Search

LyN1-MLN01B070022

Sequence:


               
               AGATGAGGTATCAGAACCTATTGGCATTTTAGGCAGTTGGTTTCCTTGACCAGGAGGATC
TCTGACCTCTTACAGTCTGGGATGAAATCAACTATGAACTGGTTTCTGCTCTCAGGTTCC
CAGCAGGCTTTATTTAGGCCTAAAAGGAACTGAAGAATGAATATCAGAAAGAAATTCTGA
CCCCAATTGTTTTGTCTCGCGGGCAGAGAGTAGGTTCTAGCCTCAGCATTTTCATTAGTT
CAGTGTTTTCATTAAAATCTCCATTAACTTGTTTCAAGCAGCAATGAGATGGAATTATCC
CTCCCACCAGACCTGGGGCGAGATGCTAGCAAAGGAGCTTTGGTTCTTTGGGCAGTAAAA
ACAGTGCTTCCTCCACTGCGGTGTTCAGTCCAGTGGGCAGGTGTGGGCAGCCTCTACCCT
TTGGCACTTTGCCTGTGAGGAAGTGAACAACCATGGTTTGAGCACAGGGACCCAGAAGGG
TAAGGAAGTCCCTGCTAGGGACATGACTTCCCTAACCTTAGGCCTTCACACCTAGATCAT
TTCTTCGCCAACAAAGTTTGACTTTGAGAAGAAGCTGGCACATGGTTGAGCAGCACTCAC
GCGGTTGGGGGAAGAGTGTTCTTCCAGTCCTCCGCCCTACAGGGCCTCCTGCTCTTCCTA
AGTACCTGTCATCAAAGGAGACGAAGATGAACCCCCCCCTCAGCCCCCACACCTCAATGA
GTTGTCAAGCTCTCTCCCTCCCACCTGAATAGGAAGCAGGAGCAGCAGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGAGGTATCAGAACCTATTGGCATTTTAGGCAGTTGGTTTCCTTGACCAGGAGGATC
TCTGACCTCTTACAGTCTGGGATGAAATCAACTATGAACTGGTTTCTGCTCTCAGGTTCC
CAGCAGGCTTTATTTAGGCCTAAAAGGAACTGAAGAATGAATATCAGAAAGAAATTCTGA
CCCCAATTGTTTTGTCTCGCGGGCAGAGAGTAGGTTCTAGCCTCAGCATTTTCATTAGTT
CAGTGTTTTCATTAAAATCTCCATTAACTTGTTTCAAGCAGCAATGAGATGGAATTATCC
CTCCCACCAGACCTGGGGCGAGATGCTAGCAAAGGAGCTTTGGTTCTTTGGGCAGTAAAA
ACAGTGCTTCCTCCACTGCGGTGTTCAGTCCAGTGGGCAGGTGTGGGCAGCCTCTACCCT
TTGGCACTTTGCCTGTGAGGAAGTGAACAACCATGGTTTGAGCACAGGGACCCAGAAGGG
TAAGGAAGTCCCTGCTAGGGACATGACTTCCCTAACCTTAGGCCTTCACACCTAGATCAT
TTCTTCGCCAACAAAGTTTGACTTTGAGAAGAAGCTGGCACATGGTTGAGCAGCACTCAC
GCGGTTGGGGGAAGAGTGTTCTTCCAGTCCTCCGCCCTACAGGGCCTCCTGCTCTTCCTA
AGTACCTGTCATCAAAGGAGACGAAGATGAACCCCCCCCTCAGCCCCCACACCTCAATGA
GTTGTCAAGCTCTCTCCCTCCCACCTGAATAGGAAGCAGGAGCAGCAGGCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               28-145, - strand, RNAz p=0.842758
               

               
               311-413, - strand, RNAz p=0.558483

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               28-145, - strand, RNAz p=0.842758
               

               
               311-413, - strand, RNAz p=0.558483

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               28-413, gnl|bosTau2|chr5 (16260821-16260441)
               

               
               28-413, gnl|canFam2|chr27 (3803593-3803245)
               

               
               28-413, gnl|echTel1|scaffold_299318 (6553-6902)
               

               
               28-413, gnl|hg17|chr12 (53225622-53225956)
               

               
               28-413, gnl|Hg17|chr12 (53225621-53225984)
               

               
               28-413, gnl|loxAfr1|scaffold_5595 (57109-57462)
               

               
               28-413, gnl|mm7|chr15 (103488895-103489235)
               

               
               28-413, gnl|Mm7|chr15 (103488906-103489267)
               

               
               28-413, gnl|monDom2|scaffold_355 (125785-126142)
               

               
               28-413, gnl|oryCun1|scaffold_213447 (6873-6536)
               

               
               28-413, gnl|panTro1|chr10 (54492794-54493128)
               

               
               28-413, gnl|rheMac2|chr11 (51662856-51663208)
               

               
               28-413, gnl|rn3|chr7 (142478497-142478834)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-413, gnl|bosTau2|chr5 (16260821-16260441)
               

               
               28-413, gnl|canFam2|chr27 (3803593-3803245)
               

               
               28-413, gnl|echTel1|scaffold_299318 (6553-6902)
               

               
               28-413, gnl|hg17|chr12 (53225622-53225956)
               

               
               28-413, gnl|Hg17|chr12 (53225621-53225984)
               

               
               28-413, gnl|loxAfr1|scaffold_5595 (57109-57462)
               

               
               28-413, gnl|mm7|chr15 (103488895-103489235)
               

               
               28-413, gnl|Mm7|chr15 (103488906-103489267)
               

               
               28-413, gnl|monDom2|scaffold_355 (125785-126142)
               

               
               28-413, gnl|oryCun1|scaffold_213447 (6873-6536)
               

               
               28-413, gnl|panTro1|chr10 (54492794-54493128)
               

               
               28-413, gnl|rheMac2|chr11 (51662856-51663208)
               

               
               28-413, gnl|rn3|chr7 (142478497-142478834)

	28-145, - strand, RNAz p=0.842758
	311-413, - strand, RNAz p=0.558483

	28-413, gnl\|bosTau2\|chr5 (16260821-16260441)
	28-413, gnl\|canFam2\|chr27 (3803593-3803245)
	28-413, gnl\|echTel1\|scaffold_299318 (6553-6902)
	28-413, gnl\|hg17\|chr12 (53225622-53225956)
	28-413, gnl\|Hg17\|chr12 (53225621-53225984)
	28-413, gnl\|loxAfr1\|scaffold_5595 (57109-57462)
	28-413, gnl\|mm7\|chr15 (103488895-103489235)
	28-413, gnl\|Mm7\|chr15 (103488906-103489267)
	28-413, gnl\|monDom2\|scaffold_355 (125785-126142)
	28-413, gnl\|oryCun1\|scaffold_213447 (6873-6536)
	28-413, gnl\|panTro1\|chr10 (54492794-54493128)
	28-413, gnl\|rheMac2\|chr11 (51662856-51663208)
	28-413, gnl\|rn3\|chr7 (142478497-142478834)