Non-Coding RNA Search

LyN1-MLN01B090021

Sequence:


               
               AAAAAGGAAAGACAATCTGAATGACGATGGAGTAGATTTGAAGACTCAACCAGTACGTAA
TACTGACCGCACTATTTATGTGAGAGATCCAACGTCCAATAAACAGCAAAGGCCAGTAAG
TAGATAGTCTCAGGGGAGCCTTCCCACAGCAGGATCAAAGCATGGCTGCATAATTTAAAC
ATCAGATCTGTACCATGTTCATGCAAAAAAAAAAAAAAAAAAAAATCCTGTCAGTTACTT
GGGCCTCAAATAATTTTTTTTTTCTTTTGCCACTGCGCTCACGGCATATGGAACTTCCCA
GGCCAGGGATTGAATCTGAGCCACTGCAGAGAAAATATCAGATCCTTAACCCACTGCACC
GCAACGGGAACTCCCTCAACTATTTTTTTATATACTTTGTAACTTACTCCTTTAAAGAGT
TTATAAATATTTCCAGGAAAACCAGGCCACTTATTGTACAATAAAGGGGCCTTTGGTCGC
CTTCTTATGTGTGGGGGTAATCACCTTTCATTATCACTGGTGTGAAAACACGCCCTTCAT
GTATAAAAATATGTCTCTGAGCTTGCGTGATTTCAGATTGGTAGTGGGATTAGTGCAGTG
GTCTGGAACCAGAGGAAATGCTGGATTCAAGTCTGAAGCCAAAATAGGTGCTAATATGTC
CTTTGGCATATCACACTTTACCCCATCTTGTCATTCTTAGGTTTATTCAAAAGAGTACGA
ACACTGAATTTGTCATGACTTATTACAGAGAATTAAGAGATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAGGAAAGACAATCTGAATGACGATGGAGTAGATTTGAAGACTCAACCAGTACGTAA
TACTGACCGCACTATTTATGTGAGAGATCCAACGTCCAATAAACAGCAAAGGCCAGTAAG
TAGATAGTCTCAGGGGAGCCTTCCCACAGCAGGATCAAAGCATGGCTGCATAATTTAAAC
ATCAGATCTGTACCATGTTCATGCAAAAAAAAAAAAAAAAAAAAATCCTGTCAGTTACTT
GGGCCTCAAATAATTTTTTTTTTCTTTTGCCACTGCGCTCACGGCATATGGAACTTCCCA
GGCCAGGGATTGAATCTGAGCCACTGCAGAGAAAATATCAGATCCTTAACCCACTGCACC
GCAACGGGAACTCCCTCAACTATTTTTTTATATACTTTGTAACTTACTCCTTTAAAGAGT
TTATAAATATTTCCAGGAAAACCAGGCCACTTATTGTACAATAAAGGGGCCTTTGGTCGC
CTTCTTATGTGTGGGGGTAATCACCTTTCATTATCACTGGTGTGAAAACACGCCCTTCAT
GTATAAAAATATGTCTCTGAGCTTGCGTGATTTCAGATTGGTAGTGGGATTAGTGCAGTG
GTCTGGAACCAGAGGAAATGCTGGATTCAAGTCTGAAGCCAAAATAGGTGCTAATATGTC
CTTTGGCATATCACACTTTACCCCATCTTGTCATTCTTAGGTTTATTCAAAAGAGTACGA
ACACTGAATTTGTCATGACTTATTACAGAGAATTAAGAGATTTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               492-611, + strand, RNAz p=0.981639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-611, + strand, RNAz p=0.981639

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-274, gnl|bosTau2|chr14 (11737452-11737183)
               

               
               1-274, gnl|Hg17|chr8 (57016990-57017248)
               

               
               1-274, gnl|Mm7|chr4 (3665894-3666156)
               


               
               374-671, gnl|bosTau2|chr14 (11737213-11736924)
               

               
               374-671, gnl|Hg17|chr8 (57017218-57018009)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr14 (11737452-11737183)
               

               
               1-274, gnl|Hg17|chr8 (57016990-57017248)
               

               
               1-274, gnl|Mm7|chr4 (3665894-3666156)
               


               
               374-671, gnl|bosTau2|chr14 (11737213-11736924)
               

               
               374-671, gnl|Hg17|chr8 (57017218-57018009)

	1-274, gnl\|bosTau2\|chr14 (11737452-11737183)
	1-274, gnl\|Hg17\|chr8 (57016990-57017248)
	1-274, gnl\|Mm7\|chr4 (3665894-3666156)

	374-671, gnl\|bosTau2\|chr14 (11737213-11736924)
	374-671, gnl\|Hg17\|chr8 (57017218-57018009)