Non-Coding RNA Search

LyN1-MLN01B110092

Sequence:


               
               AAGAGGGCTCAATAAATAACACCCACATTTTTCCCCAAATTTTGAACAAACTGAGAAAAG
AATGATAGATGAGTATCAGAATACCACCTTTATTCCTGGTAAAGCTCATGTTGCAGCACA
TGGCTTATATATGCAGGCTGTTTTACTTTCTAATATGAAGCCCAGAGTTAAATAGACATA
CCTGGTCACAGACAGGACAGGGCCAGGAACATCTTCCCTATTTGCTAGGAAAGCCTATTT
GTGGAGGAGCACTGGAGAACTTCCAGCTGGCAGATAGGCTCCCAAGAGCAAAAGGCAACA
GGTAGAATTATGGTATGTAATTCTTTAGTCTAAACTTACCAATCATGTACTATTATTCCC
CTTCTAGGAGAAAAATAGTGAGGGGATAAAGAGAGGCCAGGAGTTTTAGGGAAAATTCCA
ACTTATGGAAACAGTAGGGTTGAGGAAAAGGCATTGCCTTTCAACATGAAAATGGAGGTC
CTTGGTAATCTTAACACGTTTTATGCAACAAGTATTTTATTTTATTTTATTTTATTTGGC
TGCACCTGTGGCATGTGGAACTTCTTGGGGCCAGAGTTCACACCAGTGCCACAGTAGCAA
CCTGAGCCGCTGCAGTGACGATTCCGGATCTTAACCTGCTGCACCATAGGGAACTCCTAC
AACAAGCATTTTAAATTTTGTATGTCCTCGGTTTTGCTACTGTAGTTTTGACATAGTTGT
ATGGAGCACTGAATTTTAAAACTGAGGCTGGATTCTGCCTTTGTTCATTTCTTACTTCTC
TTGACAATATTGAGTCACTTCCTTCTCGGTGTGCATCTACTATTGCTCTTTATACTCAAT
ATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGGCTCAATAAATAACACCCACATTTTTCCCCAAATTTTGAACAAACTGAGAAAAG
AATGATAGATGAGTATCAGAATACCACCTTTATTCCTGGTAAAGCTCATGTTGCAGCACA
TGGCTTATATATGCAGGCTGTTTTACTTTCTAATATGAAGCCCAGAGTTAAATAGACATA
CCTGGTCACAGACAGGACAGGGCCAGGAACATCTTCCCTATTTGCTAGGAAAGCCTATTT
GTGGAGGAGCACTGGAGAACTTCCAGCTGGCAGATAGGCTCCCAAGAGCAAAAGGCAACA
GGTAGAATTATGGTATGTAATTCTTTAGTCTAAACTTACCAATCATGTACTATTATTCCC
CTTCTAGGAGAAAAATAGTGAGGGGATAAAGAGAGGCCAGGAGTTTTAGGGAAAATTCCA
ACTTATGGAAACAGTAGGGTTGAGGAAAAGGCATTGCCTTTCAACATGAAAATGGAGGTC
CTTGGTAATCTTAACACGTTTTATGCAACAAGTATTTTATTTTATTTTATTTTATTTGGC
TGCACCTGTGGCATGTGGAACTTCTTGGGGCCAGAGTTCACACCAGTGCCACAGTAGCAA
CCTGAGCCGCTGCAGTGACGATTCCGGATCTTAACCTGCTGCACCATAGGGAACTCCTAC
AACAAGCATTTTAAATTTTGTATGTCCTCGGTTTTGCTACTGTAGTTTTGACATAGTTGT
ATGGAGCACTGAATTTTAAAACTGAGGCTGGATTCTGCCTTTGTTCATTTCTTACTTCTC
TTGACAATATTGAGTCACTTCCTTCTCGGTGTGCATCTACTATTGCTCTTTATACTCAAT
ATATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               119-386, + strand, RNAz p=0.992704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-386, + strand, RNAz p=0.992704

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               225-300, + strand, RNAmicro p=0.999975
               

               
               219-317, - strand, RNAmicro p=0.999277

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               225-300, + strand, RNAmicro p=0.999975
               

               
               219-317, - strand, RNAmicro p=0.999277

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-406, gnl|bosTau2|chr15 (24498227-24498638)
               

               
               2-406, gnl|Hg17|chr11 (14635940-14636340)
               


               
               660-845, gnl|bosTau2|chr15 (24499078-24499266)
               

               
               660-845, gnl|Hg17|chr11 (14636452-14636937)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-406, gnl|bosTau2|chr15 (24498227-24498638)
               

               
               2-406, gnl|Hg17|chr11 (14635940-14636340)
               


               
               660-845, gnl|bosTau2|chr15 (24499078-24499266)
               

               
               660-845, gnl|Hg17|chr11 (14636452-14636937)

	225-300, + strand, RNAmicro p=0.999975
	219-317, - strand, RNAmicro p=0.999277

	2-406, gnl\|bosTau2\|chr15 (24498227-24498638)
	2-406, gnl\|Hg17\|chr11 (14635940-14636340)

	660-845, gnl\|bosTau2\|chr15 (24499078-24499266)
	660-845, gnl\|Hg17\|chr11 (14636452-14636937)