Non-Coding RNA Search

LyN1-MLN01C010026

Sequence:


               
               TGGGGTTCTTGGTGTCGATGGCCCATGAATAGCGATCTGTGAATGGGCAGTTGCCTAGTG
GGGCCGGTTTTGGCTGCTGTCATTTAACATGTGTTGCTCTATTGTGAAGTCTTATCCAGC
CGTAGGACAATGCTCATTTAATCCACCATGATGGGACCTACACACCCTGAGCCCAAGTTG
GATGCCAGGGTCAGTTGCTCAGCAGCTCGGGCTGGGGCACTGCTCTGCCTCACTGCCTAG
TTGCTGTAATCATTTTGCCTACCGTTAATTTTCCCTAAACCAGGGAAAACACGTCTGTGA
GCAGTGCAAATGTTCTCAAAAGAGATTCCAAACGGGTCGGCTGGGGTGTTGCCTCCATTC
CAGAATGGAGGCAGCATTCCAGGGAGTATAAGTTTCTTCCTTCCTCCTGGAAATGGAAGC
GTCTGGGCCCACGAGATCCCTGATGTTCTGAGGTCCAAAGTAGCAGATGGCATTATGATT
TTCCAAATCCTGATGAATGTTCTAACTGAACTTGTTCATTTCACAGTATGTAATTCTGTG
TTTTTCACTTCCTCTCCCTTCCTCCCTCCCTGTTCCTCTCTTTGTTCCTCTCATATTGAC
TAATTTTAAGCTGATGCAGTATCTCCTTTAGCCAGCTTTAAATTACCTTCTCTCTGCGTT
TATTGTATGGAACCAGGTATGGCACAGTTTCATATAATTCTCAGCTTCCAAGTTGTAACT
GGCATAACCTCTGAATTTGTTTCTGAAAATGTGTAAGCCggagttcctgtcgtggcacag
cggaaacgaatctgactagtaaccatgaggctgcagaattcatccctggccttgctcagt
gggttaaggatctggcgttgcc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTTCTTGGTGTCGATGGCCCATGAATAGCGATCTGTGAATGGGCAGTTGCCTAGTG
GGGCCGGTTTTGGCTGCTGTCATTTAACATGTGTTGCTCTATTGTGAAGTCTTATCCAGC
CGTAGGACAATGCTCATTTAATCCACCATGATGGGACCTACACACCCTGAGCCCAAGTTG
GATGCCAGGGTCAGTTGCTCAGCAGCTCGGGCTGGGGCACTGCTCTGCCTCACTGCCTAG
TTGCTGTAATCATTTTGCCTACCGTTAATTTTCCCTAAACCAGGGAAAACACGTCTGTGA
GCAGTGCAAATGTTCTCAAAAGAGATTCCAAACGGGTCGGCTGGGGTGTTGCCTCCATTC
CAGAATGGAGGCAGCATTCCAGGGAGTATAAGTTTCTTCCTTCCTCCTGGAAATGGAAGC
GTCTGGGCCCACGAGATCCCTGATGTTCTGAGGTCCAAAGTAGCAGATGGCATTATGATT
TTCCAAATCCTGATGAATGTTCTAACTGAACTTGTTCATTTCACAGTATGTAATTCTGTG
TTTTTCACTTCCTCTCCCTTCCTCCCTCCCTGTTCCTCTCTTTGTTCCTCTCATATTGAC
TAATTTTAAGCTGATGCAGTATCTCCTTTAGCCAGCTTTAAATTACCTTCTCTCTGCGTT
TATTGTATGGAACCAGGTATGGCACAGTTTCATATAATTCTCAGCTTCCAAGTTGTAACT
GGCATAACCTCTGAATTTGTTTCTGAAAATGTGTAAGCCggagttcctgtcgtggcacag
cggaaacgaatctgactagtaaccatgaggctgcagaattcatccctggccttgctcagt
gggttaaggatctggcgttgcc

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               284-441, + strand, RNAz p=0.999817

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-441, + strand, RNAz p=0.999817

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               284-441, CJ009630 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009630.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               284-441, CJ009630 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ009630.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-758, gnl|bosTau2|chr10 (7587737-7588490)
               

               
               6-758, gnl|Hg17|chr15 (65840091-65840839)
               

               
               6-758, gnl|Mm7|chr9 (63235532-63234855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-758, gnl|bosTau2|chr10 (7587737-7588490)
               

               
               6-758, gnl|Hg17|chr15 (65840091-65840839)
               

               
               6-758, gnl|Mm7|chr9 (63235532-63234855)

	6-758, gnl\|bosTau2\|chr10 (7587737-7588490)
	6-758, gnl\|Hg17\|chr15 (65840091-65840839)
	6-758, gnl\|Mm7\|chr9 (63235532-63234855)