Non-Coding RNA Search

LyN1-MLN01C030003

Sequence:


               
               GATGTTAAGGAGTGACTGTTTTAGACTGAATGTCAGGGAGGGTCACTCTGAGGAGGTGAT
GTCTGAGGAGAGGCTGGAATGAAATGAGGAGTGAGGCTGGCAGAGCTTGGAAGGAAGTGA
GGCCCAGGCAGAGTGGTGGGACCATGGTCTGACTTCACTCCAGGAGACTCTCTGGCCTGT
GGGGCTGTTTTCATGGCTGTTGCGGGAGATGAGCTCACTGACTCGAGCTCTGCTTCGGGA
TTGGCACTGAGTCACTGCTGAAGCATCGGGCAACTGACTCCCTACTCCGTTTCTAACTAT
AAAATGGGGATCTTCATAGCTACCTCTGTTTTACAAGAATCTCATGAGAATTGGTCACTG
TCTGTCTAGGAAGTATTTTTATTACACAAAAAATTATTTATCTCCTGTATAAGTTAAGGG
GTAAATCATGAGCAACTAATCCAGCTGTGTTCTCAGGGAGCAAAACGTGGTCTGGTTCAC
TCAGTGCTGACACAGATGACCTTGAGCACCTGCTGATTTTCTTAATTTTAGTGTGAGCTC
CAGACTAAGACCCCAGAGTCCTAGGTTCTGATCCCCATTCTATTGCCAGCAACCTGTGGG
GCCTTGGGCAATTCCCTTAACTTTAACCTCAGTCTATCACCTACAAAATGGGTATAGTAA
TCAAAAGAGATAATGTCGTTTGCCCTACAAATGCTACAAACAAAAATGTGAGAAATTACT
GTTATTCAAGTGGAAACTGAGGCATGACCCACTTTGCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGTTAAGGAGTGACTGTTTTAGACTGAATGTCAGGGAGGGTCACTCTGAGGAGGTGAT
GTCTGAGGAGAGGCTGGAATGAAATGAGGAGTGAGGCTGGCAGAGCTTGGAAGGAAGTGA
GGCCCAGGCAGAGTGGTGGGACCATGGTCTGACTTCACTCCAGGAGACTCTCTGGCCTGT
GGGGCTGTTTTCATGGCTGTTGCGGGAGATGAGCTCACTGACTCGAGCTCTGCTTCGGGA
TTGGCACTGAGTCACTGCTGAAGCATCGGGCAACTGACTCCCTACTCCGTTTCTAACTAT
AAAATGGGGATCTTCATAGCTACCTCTGTTTTACAAGAATCTCATGAGAATTGGTCACTG
TCTGTCTAGGAAGTATTTTTATTACACAAAAAATTATTTATCTCCTGTATAAGTTAAGGG
GTAAATCATGAGCAACTAATCCAGCTGTGTTCTCAGGGAGCAAAACGTGGTCTGGTTCAC
TCAGTGCTGACACAGATGACCTTGAGCACCTGCTGATTTTCTTAATTTTAGTGTGAGCTC
CAGACTAAGACCCCAGAGTCCTAGGTTCTGATCCCCATTCTATTGCCAGCAACCTGTGGG
GCCTTGGGCAATTCCCTTAACTTTAACCTCAGTCTATCACCTACAAAATGGGTATAGTAA
TCAAAAGAGATAATGTCGTTTGCCCTACAAATGCTACAAACAAAAATGTGAGAAATTACT
GTTATTCAAGTGGAAACTGAGGCATGACCCACTTTGCCCAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               200-313, - strand, RNAz p=0.961825
               

               
               538-655, - strand, RNAz p=0.979363

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-313, - strand, RNAz p=0.961825
               

               
               538-655, - strand, RNAz p=0.979363

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               5-655, gnl|bosTau2|chr1 (51694097-51693452)
               

               
               5-655, gnl|Hg17|chr3 (184738296-184737697)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-655, gnl|bosTau2|chr1 (51694097-51693452)
               

               
               5-655, gnl|Hg17|chr3 (184738296-184737697)

	200-313, - strand, RNAz p=0.961825
	538-655, - strand, RNAz p=0.979363

	5-655, gnl\|bosTau2\|chr1 (51694097-51693452)
	5-655, gnl\|Hg17\|chr3 (184738296-184737697)