Non-Coding RNA Search

LyN1-MLN01C040027

Sequence:


               
               TTTGAGTACATGAATGAGACATAGAGATGAAGAATTTTACTTGTTTAAAAAAGGGTTAAA
AAAAGAACTGAGTCTTACACAAAGCTTTCTGCTCCAAAGCCCCACCCCTTTTGCCACACT
AGCGGCAGAGAAATTACAGAAAGCTGATTGTGTTGTCTATTTGGCAAGTCAAAGCAAGAT
ACAGCAAGCTAAAAAGATGACTATCCCAGATTGCTTTCACTTTCTGTGACATAAAGGTTC
TAAATATAAGAAATAAGAAGCCCCTGGGCAGTTGCTCTTTGGAATTTGTGTGGACAGATC
CAGGTCATCCTTGTACTTCTTTGTGCTTTTTAAGAAGTGAGACTTTCTGATTAGGGGGTC
AGAATTTCTGTCTGATAGCTCTTAAGTTTGATTTGTTACAAACTTTAAATTTATAATTTC
TGATAAAATAGGAAACAAAAATTGCTTTCTTGCTCTCGATTTCATTATCAGAGGTTTACA
TTAGTCACGTATTAAAACCTTGAATTTCTCCTCTACTTTACAAATACATTAAACAACTCT
GATTTTTATTTCATTTTTGCTCTGTTATTAATGCATTTGCTTTAATTAATTATATGTCCA
GTATGGTTCTTAAAGAACTTTGTCAGAATGTGTCATTTTTACTGACTTTTGGCTGTTGTT
CAAATATAGTAAAGTTATTAATTGGTCTTAATGTTTGCTTTATAAGAAAATGCAATCTAg
gagttcccattgtggctcagcggaaacgaatctgactaggaaccatgaggttgcgggttt
gatccctggcctcgct

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGTACATGAATGAGACATAGAGATGAAGAATTTTACTTGTTTAAAAAAGGGTTAAA
AAAAGAACTGAGTCTTACACAAAGCTTTCTGCTCCAAAGCCCCACCCCTTTTGCCACACT
AGCGGCAGAGAAATTACAGAAAGCTGATTGTGTTGTCTATTTGGCAAGTCAAAGCAAGAT
ACAGCAAGCTAAAAAGATGACTATCCCAGATTGCTTTCACTTTCTGTGACATAAAGGTTC
TAAATATAAGAAATAAGAAGCCCCTGGGCAGTTGCTCTTTGGAATTTGTGTGGACAGATC
CAGGTCATCCTTGTACTTCTTTGTGCTTTTTAAGAAGTGAGACTTTCTGATTAGGGGGTC
AGAATTTCTGTCTGATAGCTCTTAAGTTTGATTTGTTACAAACTTTAAATTTATAATTTC
TGATAAAATAGGAAACAAAAATTGCTTTCTTGCTCTCGATTTCATTATCAGAGGTTTACA
TTAGTCACGTATTAAAACCTTGAATTTCTCCTCTACTTTACAAATACATTAAACAACTCT
GATTTTTATTTCATTTTTGCTCTGTTATTAATGCATTTGCTTTAATTAATTATATGTCCA
GTATGGTTCTTAAAGAACTTTGTCAGAATGTGTCATTTTTACTGACTTTTGGCTGTTGTT
CAAATATAGTAAAGTTATTAATTGGTCTTAATGTTTGCTTTATAAGAAAATGCAATCTAg
gagttcccattgtggctcagcggaaacgaatctgactaggaaccatgaggttgcgggttt
gatccctggcctcgct

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-167, + strand, RNAz p=0.658346

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-167, + strand, RNAz p=0.658346

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-717, gnl|bosTau2|chr1 (64305626-64304926)
               

               
               11-717, gnl|Hg17|chr3 (173383311-173384050)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-717, gnl|bosTau2|chr1 (64305626-64304926)
               

               
               11-717, gnl|Hg17|chr3 (173383311-173384050)

	11-717, gnl\|bosTau2\|chr1 (64305626-64304926)
	11-717, gnl\|Hg17\|chr3 (173383311-173384050)