Non-Coding RNA Search

LyN1-MLN01D010069

Sequence:


               
               ATTTGCCTGCCTCTGCTGTGCCAGTCACTGTGGTTGGGACACATAGCATTGCCAAATTAT
GGCACTGACAATGGTAGTCTATTTTCTGGTGCGGAGATCTGTGAGGATCACGTGGAAAGG
GAGGAAGAGGAAGAGAGAGAGGCGAGCTGTTCTGGAGCAAGAGCCAGCCCGGTGCAGTAT
TTTGAAATCTGTGGTTTGTTTTTGGGGCTTAGTTCCCCCAGGCACCCCAAATTTATGACC
CTCGTTTTAGGTACTTGCCTTCAAAGTGTTCCATGTTCTGAAACCACTTGTTGCTCTCCT
GACACTCCAAACCAAAGCTCCATCCTTAAGAAAACTTGTTTTCGATGTTTGGATAGAAGG
GTATTAGGAACTAAAGTGCGCTGACGTGTGGATAAAAGTTAGTCCTATTCCCTTTTCAGT
GGGGAGGTGGCATTAAAGGATTAAAGGTTCTGAGTCTTGAAGAAAAGTAATTCGACTTTT
TAGCCTGTTTCATCTGCAAAATGGAATGATGAAATATTTACTCTGTAAGGTTGTCAAAAG
GCTTAAACGGTTCCTGCATTCTTAAAAGAGGAGACTTGTTAACCTAAGTGAATCTCTAAA
TTGGTGGGATTTTAGCCACTGCATCAATGTGAACACTTTGGGGCAGTGTGTGGAGACTGA
GTCTGCGGTCTCCCTTGAGTGTCTCCTCTTCCTCTGCTCAGTTCTCTAGGGGCTCATTTT
GTATCTGCACAACATGAGGTTGCTTCAGGTTTTCTCATGTGCTGGTGGTGGGATCCTGCA
NGTGGTTTGAATCTAGCTTTATACTGAAGGGTCCAGCAAATACTATTTGAAAATCTCCTG
CGTACCAGCCTCCATCCNAGGCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGCCTGCCTCTGCTGTGCCAGTCACTGTGGTTGGGACACATAGCATTGCCAAATTAT
GGCACTGACAATGGTAGTCTATTTTCTGGTGCGGAGATCTGTGAGGATCACGTGGAAAGG
GAGGAAGAGGAAGAGAGAGAGGCGAGCTGTTCTGGAGCAAGAGCCAGCCCGGTGCAGTAT
TTTGAAATCTGTGGTTTGTTTTTGGGGCTTAGTTCCCCCAGGCACCCCAAATTTATGACC
CTCGTTTTAGGTACTTGCCTTCAAAGTGTTCCATGTTCTGAAACCACTTGTTGCTCTCCT
GACACTCCAAACCAAAGCTCCATCCTTAAGAAAACTTGTTTTCGATGTTTGGATAGAAGG
GTATTAGGAACTAAAGTGCGCTGACGTGTGGATAAAAGTTAGTCCTATTCCCTTTTCAGT
GGGGAGGTGGCATTAAAGGATTAAAGGTTCTGAGTCTTGAAGAAAAGTAATTCGACTTTT
TAGCCTGTTTCATCTGCAAAATGGAATGATGAAATATTTACTCTGTAAGGTTGTCAAAAG
GCTTAAACGGTTCCTGCATTCTTAAAAGAGGAGACTTGTTAACCTAAGTGAATCTCTAAA
TTGGTGGGATTTTAGCCACTGCATCAATGTGAACACTTTGGGGCAGTGTGTGGAGACTGA
GTCTGCGGTCTCCCTTGAGTGTCTCCTCTTCCTCTGCTCAGTTCTCTAGGGGCTCATTTT
GTATCTGCACAACATGAGGTTGCTTCAGGTTTTCTCATGTGCTGGTGGTGGGATCCTGCA
NGTGGTTTGAATCTAGCTTTATACTGAAGGGTCCAGCAAATACTATTTGAAAATCTCCTG
CGTACCAGCCTCCATCCNAGGCACTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               566-680, + strand, RNAz p=0.732156

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               566-680, + strand, RNAz p=0.732156

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-428, gnl|bosTau2|chr28 (24597015-24597418)
               

               
               1-428, gnl|Hg17|chr5 (179429814-179429368)
               

               
               1-428, gnl|Mm7|chr11 (49983564-49983951)
               


               
               527-818, gnl|bosTau2|chr28 (24597755-24598055)
               

               
               527-818, gnl|Hg17|chr5 (179429259-179428963)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-428, gnl|bosTau2|chr28 (24597015-24597418)
               

               
               1-428, gnl|Hg17|chr5 (179429814-179429368)
               

               
               1-428, gnl|Mm7|chr11 (49983564-49983951)
               


               
               527-818, gnl|bosTau2|chr28 (24597755-24598055)
               

               
               527-818, gnl|Hg17|chr5 (179429259-179428963)

	1-428, gnl\|bosTau2\|chr28 (24597015-24597418)
	1-428, gnl\|Hg17\|chr5 (179429814-179429368)
	1-428, gnl\|Mm7\|chr11 (49983564-49983951)

	527-818, gnl\|bosTau2\|chr28 (24597755-24598055)
	527-818, gnl\|Hg17\|chr5 (179429259-179428963)