Non-Coding RNA Search

LyN1-MLN01D100017

Sequence:


               
               GAATTGAACAGTAAAATAGGGGGAACAGTACCCGTTGAATAAACTTCAGGACATATGGAT
GCTGAACATGAAACAAAGCAGTCTTAAGTAAGTTATAACATAGACCTTCTGATTATGTTT
TTATTGCCTTGAAATCTTCTTCAGAAGGGAAGTCAAAAATTTCAGTAACTTGAAGATGTC
TGGAAGGTCAGCTTCCCATCAGCTTTTCTGCGTCTGAAGTGACCCTCTAGTTGGTCCTCT
AACCTGCTCCCGTTCCCATCTGGTGGATTCCAAGACTCCTTTGTCTGTCTCAAAGAGTCA
AAAAAAAAATGAGCCCATTAAGAGACTGTAAAAGATCCGGGCTGTTCTGCTCAAGGAATC
ATAGGACGCGGGAAACGAGATTTATGAGATGAGGTAATAGAAATACAAATAGCAATACAT
TCTAAAGGAACTTTTTCCTCAAATGCCCATTTCCTTTGTGATTGATTTGTGTGGGGGAGG
CTGAGGAGATTGAATTCGCCCCACCTTCCCCACCACATTCCTCCTGTTTCAGGTTCAAAA
TGTTCCCCATCACAGTACACGGGCATCTTCTCAGAGGTTGGCCCCCTGGGACACTCCCCA
CGCTCAGCTCTGCAGTTTCCAGAGGCTTCCTCCAGTGACATTCCTACTTGCCATTAACTC
CTGAGAAATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTGAACAGTAAAATAGGGGGAACAGTACCCGTTGAATAAACTTCAGGACATATGGAT
GCTGAACATGAAACAAAGCAGTCTTAAGTAAGTTATAACATAGACCTTCTGATTATGTTT
TTATTGCCTTGAAATCTTCTTCAGAAGGGAAGTCAAAAATTTCAGTAACTTGAAGATGTC
TGGAAGGTCAGCTTCCCATCAGCTTTTCTGCGTCTGAAGTGACCCTCTAGTTGGTCCTCT
AACCTGCTCCCGTTCCCATCTGGTGGATTCCAAGACTCCTTTGTCTGTCTCAAAGAGTCA
AAAAAAAAATGAGCCCATTAAGAGACTGTAAAAGATCCGGGCTGTTCTGCTCAAGGAATC
ATAGGACGCGGGAAACGAGATTTATGAGATGAGGTAATAGAAATACAAATAGCAATACAT
TCTAAAGGAACTTTTTCCTCAAATGCCCATTTCCTTTGTGATTGATTTGTGTGGGGGAGG
CTGAGGAGATTGAATTCGCCCCACCTTCCCCACCACATTCCTCCTGTTTCAGGTTCAAAA
TGTTCCCCATCACAGTACACGGGCATCTTCTCAGAGGTTGGCCCCCTGGGACACTCCCCA
CGCTCAGCTCTGCAGTTTCCAGAGGCTTCCTCCAGTGACATTCCTACTTGCCATTAACTC
CTGAGAAATTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               421-580, - strand, RNAz p=0.965245

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-580, - strand, RNAz p=0.965245

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               421-580, CJ008941 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ008941.1|), blast E-value=0, identity=100% 
               

               
               421-576, AGENCOURT_8347510 NIH_MGC_113 Homo sapiens cDNA clone IMAGE 
(gb|BQ712195.1|), blast E-value=2e-38, identity=89.1%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               421-580, CJ008941 full-length enriched swine cDNA library, adult mesenteric 
(dbj|CJ008941.1|), blast E-value=0, identity=100% 
               

               
               421-576, AGENCOURT_8347510 NIH_MGC_113 Homo sapiens cDNA clone IMAGE 
(gb|BQ712195.1|), blast E-value=2e-38, identity=89.1%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-673, gnl|bosTau2|chr15 (4349234-4349873)
               

               
               25-673, gnl|Hg17|chr11 (95534529-95533884)
               

               
               25-673, gnl|Mm7|chr9 (13395599-13396189)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-673, gnl|bosTau2|chr15 (4349234-4349873)
               

               
               25-673, gnl|Hg17|chr11 (95534529-95533884)
               

               
               25-673, gnl|Mm7|chr9 (13395599-13396189)

	421-580, CJ008941 full-length enriched swine cDNA library, adult mesenteric (dbj\|CJ008941.1\|), blast E-value=0, identity=100%
	421-576, AGENCOURT_8347510 NIH_MGC_113 Homo sapiens cDNA clone IMAGE (gb\|BQ712195.1\|), blast E-value=2e-38, identity=89.1%

	25-673, gnl\|bosTau2\|chr15 (4349234-4349873)
	25-673, gnl\|Hg17\|chr11 (95534529-95533884)
	25-673, gnl\|Mm7\|chr9 (13395599-13396189)