Non-Coding RNA Search

LyN1-MLN01E010004

Sequence:


               
               GAGGAGGAGGAGGAGGCACCCCCTTCGTATTCTTCTTATCGTTATTTTATACATATATGA
TTTTTTTTGGAGGGAGGGTGTTGGTTCCCGGCTGAAGAGCACTTATTTAAAATACTAAAA
AAAGAACATTTTTGGGCGATCTCCAGGGTTTTTTTAACTAGCTCTGTGTGTTATAGCAGA
AGAAGCAGAAGAAGGAGCAAGAAAGAGGAAAAGAAGAGGATTATTTATTCGACCTACTTT
GGATGTCTCTTTCGCTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTCTTTTTCTTCCGA
TTTTTATTTTTTCTATTTCGCTGTGAAATCGTCCCCGGCGTGAATTATCTCGTATTTTTT
TCTCCCTCTGTCACCTCCCGAAAGAAAAAGGCAGCGAGAGCCCGGCGCCACCCGCACAAC
AAAAAGAGCAAAGTGTGTGATCCTCCTCGCTGGCTGCCTTCTGCTCTCCAGCGCTGCCTT
CCTGAATGGCTGGCTGCGTCCGGCCCTGGACCTGGCCCCCCGACACCAGCGCGCCCTGAT
CGCCGCCGGGAGCCTCGCCCCGCGCCCTGGTCGGGTCACCGCGCTCCCCTCAATCCCGAG
CCCAGCGAGGGCTCCCGCCGGGACAACGGCGGCGGTGCGGGCGGCCCCGACCTGGGCTCG
CGCTCCTCTGGCTGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGAGGAGGAGGCACCCCCTTCGTATTCTTCTTATCGTTATTTTATACATATATGA
TTTTTTTTGGAGGGAGGGTGTTGGTTCCCGGCTGAAGAGCACTTATTTAAAATACTAAAA
AAAGAACATTTTTGGGCGATCTCCAGGGTTTTTTTAACTAGCTCTGTGTGTTATAGCAGA
AGAAGCAGAAGAAGGAGCAAGAAAGAGGAAAAGAAGAGGATTATTTATTCGACCTACTTT
GGATGTCTCTTTCGCTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTCTTTTTCTTCCGA
TTTTTATTTTTTCTATTTCGCTGTGAAATCGTCCCCGGCGTGAATTATCTCGTATTTTTT
TCTCCCTCTGTCACCTCCCGAAAGAAAAAGGCAGCGAGAGCCCGGCGCCACCCGCACAAC
AAAAAGAGCAAAGTGTGTGATCCTCCTCGCTGGCTGCCTTCTGCTCTCCAGCGCTGCCTT
CCTGAATGGCTGGCTGCGTCCGGCCCTGGACCTGGCCCCCCGACACCAGCGCGCCCTGAT
CGCCGCCGGGAGCCTCGCCCCGCGCCCTGGTCGGGTCACCGCGCTCCCCTCAATCCCGAG
CCCAGCGAGGGCTCCCGCCGGGACAACGGCGGCGGTGCGGGCGGCCCCGACCTGGGCTCG
CGCTCCTCTGGCTGCTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               174-293, + strand, RNAz p=0.892109

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               174-293, + strand, RNAz p=0.892109

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               206-299, + strand, RNAmicro p=0.994611
               

               
               230-344, - strand, RNAmicro p=0.96951

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               206-299, + strand, RNAmicro p=0.994611
               

               
               230-344, - strand, RNAmicro p=0.96951

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_005654, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005654, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-645, gnl|bosTau2|chr7 (58276067-58275423)
               

               
               1-645, gnl|Hg17|chr5 (92945003-92945624)
               

               
               1-645, gnl|Mm7|chr13 (75214844-75214205)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-645, gnl|bosTau2|chr7 (58276067-58275423)
               

               
               1-645, gnl|Hg17|chr5 (92945003-92945624)
               

               
               1-645, gnl|Mm7|chr13 (75214844-75214205)

	206-299, + strand, RNAmicro p=0.994611
	230-344, - strand, RNAmicro p=0.96951

	1-645, gnl\|bosTau2\|chr7 (58276067-58275423)
	1-645, gnl\|Hg17\|chr5 (92945003-92945624)
	1-645, gnl\|Mm7\|chr13 (75214844-75214205)